MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 133486 bp
Accession: NC_015063 Location: 1..133486 Organism: Rahnella sp. Y9602 Replicon: plasmid pRAHAQ02
Accession: NC_015063 Location: 1..133486 Organism: Rahnella sp. Y9602 Replicon: plasmid pRAHAQ02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RAHAQ_RS25115 () | 547..1656 | + | 1110 | WP_148232228.1 | ABC transporter substrate-binding protein | - |
| RAHAQ_RS25120 () | 1640..2590 | + | 951 | WP_013578303.1 | ABC transporter permease subunit | - |
| RAHAQ_RS25125 () | 2599..3381 | + | 783 | WP_041689244.1 | ABC transporter permease subunit | - |
| RAHAQ_RS25130 () | 3378..4469 | + | 1092 | WP_013578305.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| RAHAQ_RS25135 () | 5126..5789 | + | 664 | Protein_4 | IS3 family transposase ISKpn34 | Transposase |
| RAHAQ_RS25140 () | 5858..6973 | - | 1116 | WP_013578307.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| RAHAQ_RS25830 () | 7067..7936 | + | 870 | WP_013578308.1 | LysR family transcriptional regulator | - |
| RAHAQ_RS25150 () | 8197..8940 | - | 744 | WP_013578309.1 | NAD(P)-binding domain-containing protein | - |
| RAHAQ_RS25155 () | 9123..9881 | - | 759 | WP_013578310.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| RAHAQ_RS25160 () | 9999..10595 | + | 597 | WP_013578311.1 | TetR/AcrR family transcriptional regulator | - |
| RAHAQ_RS27035 () | 10729..10875 | - | 147 | WP_013578312.1 | hypothetical protein | - |
| RAHAQ_RS26925 () | 11263..11454 | - | 192 | WP_148232229.1 | hypothetical protein | - |
| RAHAQ_RS25165 () | 11817..12218 | - | 402 | WP_013578313.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| RAHAQ_RS25170 () | 12220..12516 | - | 297 | WP_013578314.1 | type II toxin-antitoxin system MqsR family toxin | Toxin Detail |
| RAHAQ_RS25175 () | 12611..13060 | - | 450 | WP_148232230.1 | hypothetical protein | - |
| RAHAQ_RS25180 () | 13066..13371 | - | 306 | WP_013578316.1 | hypothetical protein | - |
| RAHAQ_RS25185 () | 13374..13616 | - | 243 | WP_013578317.1 | DUF905 family protein | - |
| RAHAQ_RS26930 () | 13974..14210 | + | 237 | WP_148232231.1 | hypothetical protein | - |
| RAHAQ_RS25190 () | 14446..14646 | - | 201 | WP_013578318.1 | hypothetical protein | - |
| RAHAQ_RS25195 () | 14688..15194 | - | 507 | WP_041689224.1 | antirestriction protein ArdA | - |
| RAHAQ_RS26940 () | 15596..15796 | - | 201 | WP_052300800.1 | hypothetical protein | - |
| RAHAQ_RS25205 () | 16431..16652 | - | 222 | WP_013578321.1 | hypothetical protein | - |
| RAHAQ_RS25210 () | 16681..17325 | - | 645 | WP_013578322.1 | methylase | - |
| RAHAQ_RS25215 () | 17866..18099 | - | 234 | WP_013578324.1 | hypothetical protein | - |
| RAHAQ_RS25220 () | 18636..19640 | - | 1005 | WP_013573449.1 | IS110 family transposase ISEch4 | Transposase |
| RAHAQ_RS25225 () | 19749..19982 | - | 234 | WP_013578325.1 | hypothetical protein | - |
| RAHAQ_RS25230 () | 20020..20415 | - | 396 | WP_013578326.1 | plasmid partitioning/stability family protein | - |
| RAHAQ_RS27135 () | 20434..20757 | - | 324 | WP_052300791.1 | hypothetical protein | - |
| RAHAQ_RS27140 () | 20928..21137 | - | 210 | WP_193784879.1 | hypothetical protein | - |
| RAHAQ_RS25240 () | 21381..22346 | - | 966 | WP_013578327.1 | ParB/RepB/Spo0J family partition protein | - |
| RAHAQ_RS25245 () | 22355..23554 | - | 1200 | WP_013578328.1 | AAA family ATPase | - |
| RAHAQ_RS25250 () | 23884..24144 | - | 261 | WP_013578329.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| RAHAQ_RS25255 () | 24141..24386 | - | 246 | WP_013578330.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RAHAQ_RS25260 () | 24801..25808 | - | 1008 | WP_013578331.1 | replication initiation protein | - |
| RAHAQ_RS25265 () | 26737..27372 | + | 636 | WP_013578332.1 | AAA family ATPase | - |
| RAHAQ_RS25270 () | 27366..27626 | + | 261 | WP_013578333.1 | hypothetical protein | - |
| RAHAQ_RS25275 () | 27841..28632 | - | 792 | WP_013578334.1 | IS91 family transposase ISMno23 | Transposase |
| RAHAQ_RS25280 () | 29183..29968 | - | 786 | WP_013578335.1 | hypothetical protein | - |
| RAHAQ_RS27040 () | 30169..30351 | + | 183 | WP_041689225.1 | response regulator transcription factor | - |
| RAHAQ_RS25290 () | 30774..31391 | + | 618 | WP_013578336.1 | Type-1 fimbrial protein, A chain | VF |
| RAHAQ_RS25295 () | 31472..32173 | + | 702 | WP_013578337.1 | putative fimbrial chaperone SfmC | VF |
| RAHAQ_RS25300 () | 32222..34879 | + | 2658 | WP_013578338.1 | Outer membrane usher protein FimD | VF |
| RAHAQ_RS25305 () | 34919..35500 | + | 582 | WP_148232234.1 | S-fimbrial protein subunit SfaG | VF |
| RAHAQ_RS25850 () | 35526..36080 | + | 555 | WP_013578340.1 | type 1 fimbrial protein | - |
| RAHAQ_RS25315 () | 36178..36963 | + | 786 | WP_013578341.1 | hypothetical protein | - |
| RAHAQ_RS25320 () | 38057..40657 | + | 2601 | WP_013578342.1 | AIDA-I autotransporter | VF |
| RAHAQ_RS25325 () | 40770..41150 | + | 381 | WP_013578343.1 | hypothetical protein | - |
| RAHAQ_RS25335 () | 41813..42217 | + | 405 | WP_013578345.1 | DUF4354 family protein | - |
| RAHAQ_RS25340 () | 42531..43295 | + | 765 | WP_148232240.1 | winged helix-turn-helix domain-containing protein | - |
| RAHAQ_RS25345 () | 43288..43773 | + | 486 | WP_013578347.1 | hypothetical protein | - |
| RAHAQ_RS25350 () | 44700..44936 | + | 237 | WP_013578348.1 | YgdI/YgdR family lipoprotein | - |
| RAHAQ_RS25355 () | 45125..45427 | + | 303 | WP_013578349.1 | hypothetical protein | - |
| RAHAQ_RS25360 () | 45647..46027 | + | 381 | WP_013578350.1 | DUF4354 family protein | - |
| RAHAQ_RS25365 () | 47512..50913 | + | 3402 | WP_013578351.1 | hypothetical protein | - |
| RAHAQ_RS25370 () | 51055..52542 | + | 1488 | WP_041689228.1 | hypothetical protein | - |
| RAHAQ_RS25375 () | 52500..54746 | + | 2247 | WP_052300796.1 | RHS repeat protein | - |
| RAHAQ_RS25855 () | 55044..56384 | + | 1341 | WP_052300797.1 | RHS repeat-associated core domain-containing protein | - |
| RAHAQ_RS26460 () | 56518..57738 | + | 1221 | WP_013578353.1 | RHS repeat-associated core domain-containing protein | - |
| RAHAQ_RS25395 () | 58303..59477 | + | 1175 | WP_101377519.1 | IS3 family transposase ISSlo2 | Transposase |
| RAHAQ_RS25400 () | 59561..60811 | + | 1251 | WP_083812251.1 | AAA family ATPase | - |
| RAHAQ_RS25405 () | 60796..61833 | + | 1038 | WP_013578356.1 | AAA family ATPase | - |
| RAHAQ_RS25410 () | 62296..63072 | + | 777 | WP_013578358.1 | hypothetical protein | - |
| RAHAQ_RS25415 () | 63383..64336 | + | 954 | WP_013578359.1 | ABC transporter permease | - |
| RAHAQ_RS25420 () | 64419..65147 | - | 729 | WP_041689265.1 | tyrosine-type recombinase/integrase | - |
| RAHAQ_RS25425 () | 65690..67180 | + | 1491 | WP_013578361.1 | hypothetical protein | - |
| RAHAQ_RS26600 () | 67305..68018 | + | 714 | WP_013578362.1 | hypothetical protein | - |
| RAHAQ_RS25435 () | 68471..69226 | + | 756 | WP_013578363.1 | DUF2971 domain-containing protein | - |
| RAHAQ_RS25440 () | 69653..71239 | + | 1587 | WP_013578364.1 | sensor domain-containing diguanylate cyclase | - |
| RAHAQ_RS25445 () | 71597..73696 | - | 2100 | WP_013578365.1 | peptidase domain-containing ABC transporter | - |
| RAHAQ_RS25450 () | 73689..74963 | - | 1275 | WP_013578366.1 | HlyD family secretion protein | - |
| RAHAQ_RS25455 () | 75813..76151 | + | 339 | WP_013578367.1 | hypothetical protein | - |
| RAHAQ_RS25460 () | 76261..76893 | - | 633 | WP_013578368.1 | CPBP family intramembrane metalloprotease | - |
| RAHAQ_RS25465 () | 77688..78431 | - | 744 | WP_162470193.1 | site-specific integrase | - |
| RAHAQ_RS25470 () | 78467..78997 | - | 531 | WP_148232242.1 | hypothetical protein | - |
| RAHAQ_RS25475 () | 79446..80441 | + | 996 | WP_013578371.1 | hypothetical protein | - |
| RAHAQ_RS25480 () | 80445..81059 | + | 615 | Protein_75 | hypothetical protein | - |
| RAHAQ_RS25495 () | 82265..82588 | + | 324 | Protein_77 | hypothetical protein | - |
| RAHAQ_RS25500 () | 82962..83939 | - | 978 | WP_013578374.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RAHAQ_RS25505 () | 84295..87279 | - | 2985 | WP_013578375.1 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| RAHAQ_RS25510 () | 87440..88018 | + | 579 | WP_013578376.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RAHAQ_RS25515 () | 88271..89086 | + | 816 | WP_013578377.1 | SDR family oxidoreductase | - |
| RAHAQ_RS25520 () | 89116..89877 | + | 762 | WP_013578378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| RAHAQ_RS25525 () | 89920..91119 | + | 1200 | WP_013578379.1 | MFS transporter | - |
| RAHAQ_RS25530 () | 91130..92065 | + | 936 | WP_013578380.1 | HTH-type transcriptional regulator CdhR | VF |
| RAHAQ_RS25535 () | 92097..93005 | - | 909 | WP_013578381.1 | AraC family transcriptional regulator | - |
| RAHAQ_RS25540 () | 93127..93660 | + | 534 | WP_013578382.1 | carboxymuconolactone decarboxylase family protein | - |
| RAHAQ_RS25545 () | 93872..95080 | - | 1209 | WP_013578383.1 | MFS transporter | - |
| RAHAQ_RS25550 () | 95184..96101 | + | 918 | WP_013578384.1 | LysR family transcriptional regulator | - |
| RAHAQ_RS25555 () | 96300..97217 | - | 918 | WP_013199736.1 | AraC family transcriptional regulator | - |
| RAHAQ_RS25560 () | 97316..98383 | + | 1068 | WP_013578385.1 | aldo/keto reductase | - |
| RAHAQ_RS25565 () | 98611..99120 | + | 510 | WP_013578386.1 | GrpB family protein | - |
| RAHAQ_RS25570 () | 99224..99826 | + | 603 | WP_013578387.1 | tyrosine-type recombinase/integrase | - |
| RAHAQ_RS25575 () | 100062..100622 | + | 561 | WP_013578388.1 | hypothetical protein | - |
| RAHAQ_RS25580 () | 101059..102132 | + | 1074 | WP_013578390.1 | hypothetical protein | - |
| RAHAQ_RS25585 () | 102394..102846 | + | 453 | WP_013578391.1 | N-acetyltransferase | - |
| RAHAQ_RS25590 () | 103011..103228 | - | 218 | Protein_96 | hypothetical protein | - |
| RAHAQ_RS25595 () | 103228..103758 | - | 531 | WP_013578392.1 | GNAT family N-acetyltransferase | - |
| RAHAQ_RS25600 () | 103958..104860 | - | 903 | WP_013578393.1 | LysR family transcriptional regulator | - |
| RAHAQ_RS25605 () | 104951..105967 | + | 1017 | WP_013578394.1 | NADP-dependent oxidoreductase | - |
| RAHAQ_RS25610 () | 106030..106332 | + | 303 | WP_013578395.1 | antibiotic biosynthesis monooxygenase | - |
| RAHAQ_RS25615 () | 106520..106972 | - | 453 | WP_013578396.1 | GNAT family N-acetyltransferase | - |
| RAHAQ_RS25620 () | 107198..107662 | - | 465 | WP_013578397.1 | NUDIX domain-containing protein | - |
| RAHAQ_RS25625 () | 107892..108722 | - | 831 | WP_013578398.1 | putative isomerase YddE | VF |
| RAHAQ_RS25630 () | 109432..110250 | - | 819 | WP_013578399.1 | abortive infection family protein | - |
| RAHAQ_RS25865 () | 110371..111252 | - | 882 | WP_013578400.1 | hypothetical protein | - |
| RAHAQ_RS25640 () | 111368..111814 | + | 447 | WP_013578401.1 | hypothetical protein | - |
| RAHAQ_RS25645 () | 111927..112484 | + | 558 | WP_193784878.1 | hypothetical protein | - |
| RAHAQ_RS26470 () | 113898..114033 | - | 136 | Protein_108 | transposase | - |
| RAHAQ_RS25655 () | 114127..114660 | - | 534 | WP_013578402.1 | thioredoxin fold domain-containing protein | - |
| RAHAQ_RS26615 () | 115084..115302 | - | 219 | WP_148232237.1 | hypothetical protein | - |
| RAHAQ_RS26960 () | 115429..115792 | - | 364 | Protein_111 | GGDEF domain-containing protein | - |
| RAHAQ_RS26475 () | 116114..116380 | - | 267 | WP_013578404.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| RAHAQ_RS25660 () | 116377..116622 | - | 246 | WP_013578405.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RAHAQ_RS25665 () | 116953..118002 | + | 1050 | WP_041689277.1 | tyrosine-type recombinase/integrase | - |
| RAHAQ_RS26480 () | 118094..118573 | - | 480 | WP_013578407.1 | GNAT family N-acetyltransferase | Toxin Detail |
| RAHAQ_RS25670 () | 118570..118830 | - | 261 | WP_013578408.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| RAHAQ_RS26620 () | 118923..119165 | + | 243 | Protein_117 | serine recombinase | - |
| RAHAQ_RS25675 () | 119724..120332 | - | 609 | WP_013578409.1 | CPBP family intramembrane metalloprotease | - |
| RAHAQ_RS25680 () | 120401..121732 | - | 1332 | Protein_119 | Toxin RTX-I translocation ATP-binding protein | VF |
| RAHAQ_RS25685 () | 122223..123995 | - | 1773 | WP_013578410.1 | putative signaling protein | VF |
| RAHAQ_RS25690 () | 124411..124848 | + | 438 | WP_013578411.1 | VOC family protein | - |
| RAHAQ_RS25695 () | 125367..125897 | - | 531 | WP_013578412.1 | thioredoxin fold domain-containing protein | - |
| RAHAQ_RS25700 () | 125934..126440 | - | 507 | WP_041689239.1 | Leukotoxin export ATP-binding protein LtxB | VF |
| RAHAQ_RS25705 () | 126559..126777 | - | 219 | WP_041689240.1 | hypothetical protein | - |
| RAHAQ_RS25710 () | 126949..127359 | - | 411 | WP_013578413.1 | heme-binding protein | - |
| RAHAQ_RS25715 () | 127388..128608 | - | 1221 | WP_013578414.1 | MFS transporter | - |
| RAHAQ_RS25720 () | 128714..129406 | + | 693 | WP_013578415.1 | TetR/AcrR family transcriptional regulator | - |
| RAHAQ_RS25725 () | 129442..129831 | + | 390 | WP_013578416.1 | tautomerase family protein | - |
| RAHAQ_RS25730 () | 129882..130178 | + | 297 | WP_013578417.1 | antibiotic biosynthesis monooxygenase | - |
| RAHAQ_RS25735 () | 130233..131126 | - | 894 | WP_013578418.1 | serine/threonine protein phosphatase | - |
| RAHAQ_RS25740 () | 131123..132652 | - | 1530 | WP_013578419.1 | alkaline phosphatase family protein | - |
| RAHAQ_RS25745 () | 132642..133433 | - | 792 | WP_041689287.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|