MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74610 bp
Accession: NC_014500 Location: 3126494..3201103 Organism: Dickeya dadantii 3937 Replicon: chromosome
Accession: NC_014500 Location: 3126494..3201103 Organism: Dickeya dadantii 3937 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDA3937_RS13705 (Dda3937_03960) | 3122038..3122694 | - | 657 | WP_013318560.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| DDA3937_RS13710 (Dda3937_03961) | 3123345..3123569 | + | 225 | WP_013318562.1 | DUF2594 family protein | - |
| DDA3937_RS13720 (Dda3937_03962) | 3124304..3125707 | + | 1404 | WP_013318563.1 | D-serine/D-alanine/glycine transporter | - |
| DDA3937_RS13725 (Dda3937_03963) | 3125783..3126049 | - | 267 | Protein_2752 | LysR family transcriptional regulator | - |
| DDA3937_RS13735 (Dda3937_00080) | 3126671..3127954 | + | 1284 | WP_013318565.1 | Prophage integrase IntS ; Integrase | Integrase |
| DDA3937_RS13740 (Dda3937_00079) | 3128109..3128420 | - | 312 | WP_013318566.1 | DUF736 domain-containing protein | - |
| DDA3937_RS13750 (Dda3937_00100) | 3129435..3130361 | + | 927 | WP_013318567.1 | hypothetical protein | - |
| DDA3937_RS22335 (Dda3937_04645) | 3130907..3131407 | - | 501 | WP_013318568.1 | SMI1/KNR4 family protein | - |
| DDA3937_RS13755 (Dda3937_02773) | 3131814..3135728 | - | 3915 | Protein_2757 | PAAR domain-containing protein | - |
| DDA3937_RS13760 (Dda3937_02772) | 3135740..3136147 | - | 408 | WP_013318570.1 | DUF1795 domain-containing protein | - |
| DDA3937_RS13765 (Dda3937_02771) | 3136161..3138014 | - | 1854 | WP_013318571.1 | Actin cross-linking toxin VgrG1 | VF |
| DDA3937_RS13770 (Dda3937_02770) | 3138127..3138645 | - | 519 | WP_013318572.1 | Major exported protein | VF |
| DDA3937_RS23430 | 3139082..3139228 | + | 147 | WP_158305123.1 | hypothetical protein | - |
| DDA3937_RS13775 (Dda3937_02768) | 3139329..3139574 | + | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| DDA3937_RS13780 (Dda3937_02767) | 3139904..3140191 | - | 288 | WP_033111943.1 | helix-turn-helix domain-containing protein | - |
| DDA3937_RS13785 (Dda3937_02766) | 3140296..3140550 | + | 255 | WP_013318577.1 | helix-turn-helix domain-containing protein | - |
| DDA3937_RS13790 (Dda3937_02765) | 3140638..3140886 | + | 249 | WP_013318578.1 | helix-turn-helix domain-containing protein | - |
| DDA3937_RS13795 (Dda3937_02763) | 3141185..3141472 | - | 288 | WP_033111944.1 | helix-turn-helix domain-containing protein | - |
| DDA3937_RS13800 (Dda3937_02762) | 3141606..3141884 | + | 279 | WP_013318581.1 | HTH-type transcriptional regulator Xre | VF |
| DDA3937_RS13805 (Dda3937_02761) | 3141998..3142255 | + | 258 | WP_013318582.1 | helix-turn-helix domain-containing protein | - |
| DDA3937_RS13810 (Dda3937_02760) | 3142932..3143126 | + | 195 | WP_013318585.1 | AlpA family transcriptional regulator | - |
| DDA3937_RS13815 (Dda3937_02759) | 3143143..3143727 | + | 585 | WP_013318586.1 | DUF2857 domain-containing protein | - |
| DDA3937_RS13820 | 3143717..3143926 | + | 210 | WP_033111945.1 | TraR/DksA family transcriptional regulator | - |
| DDA3937_RS13825 (Dda3937_02757) | 3144145..3146025 | + | 1881 | WP_013318588.1 | DUF4209 domain-containing protein | - |
| DDA3937_RS13830 (Dda3937_02756) | 3146718..3146951 | + | 234 | WP_033111946.1 | hypothetical protein | - |
| DDA3937_RS13835 (Dda3937_02755) | 3147021..3147668 | + | 648 | WP_033111947.1 | Type IV secretion system protein virB1 | VF |
| DDA3937_RS13840 (Dda3937_02754) | 3147682..3147963 | + | 282 | WP_013318592.1 | hypothetical protein | VF |
| DDA3937_RS13845 (Dda3937_02753) | 3147974..3150721 | + | 2748 | WP_033111948.1 | Type IV secretion system protein virB4 | VF |
| DDA3937_RS13850 (Dda3937_02752) | 3150747..3151463 | + | 717 | WP_013318594.1 | type IV secretion system protein | - |
| DDA3937_RS22340 (Dda3937_02751) | 3151474..3151698 | + | 225 | WP_071819883.1 | EexN family lipoprotein | - |
| DDA3937_RS13855 (Dda3937_02750) | 3151710..3152738 | + | 1029 | WP_013318596.1 | type IV secretion system protein | - |
| DDA3937_RS13860 (Dda3937_02748) | 3152959..3153642 | + | 684 | WP_013318597.1 | Type IV secretion system protein PtlE | VF |
| DDA3937_RS13865 (Dda3937_02747) | 3153639..3154532 | + | 894 | WP_013318598.1 | P-type conjugative transfer protein VirB9 | - |
| DDA3937_RS13870 (Dda3937_02746) | 3154529..3155737 | + | 1209 | WP_013318599.1 | Type IV secretion system protein virB10 | VF |
| DDA3937_RS13875 (Dda3937_02745) | 3155727..3156743 | + | 1017 | WP_013318600.1 | Type IV secretion system protein VirB11 | VF |
| DDA3937_RS13880 (Dda3937_02744) | 3156784..3157086 | + | 303 | WP_013318601.1 | IncN plasmid KikA protein | - |
| DDA3937_RS13885 (Dda3937_04293) | 3157783..3159546 | + | 1764 | WP_081441344.1 | type IV secretion system DNA-binding domain-containing protein | - |
| DDA3937_RS13890 (Dda3937_04166) | 3159555..3160301 | + | 747 | WP_013318604.1 | hypothetical protein | - |
| DDA3937_RS13895 (Dda3937_04167) | 3160573..3161811 | + | 1239 | WP_033111949.1 | IS110 family transposase ISCps4 | Transposase |
| DDA3937_RS22350 (Dda3937_04168) | 3161932..3162798 | - | 867 | WP_202796554.1 | hypothetical protein | - |
| DDA3937_RS23495 (Dda3937_04169) | 3163024..3163671 | - | 648 | WP_033112357.1 | hypothetical protein | - |
| DDA3937_RS13905 (Dda3937_04347) | 3163984..3164427 | - | 444 | WP_013318608.1 | hypothetical protein | - |
| DDA3937_RS13910 | 3164636..3165183 | - | 548 | Protein_2791 | hypothetical protein | - |
| DDA3937_RS22355 | 3165419..3165553 | + | 135 | Protein_2792 | mobilization protein mobC | - |
| DDA3937_RS13920 (Dda3937_04171) | 3165550..3165864 | - | 315 | WP_013318612.1 | CcdB family protein | Toxin Detail |
| DDA3937_RS13925 (Dda3937_04172) | 3165867..3166103 | - | 237 | WP_013318613.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| DDA3937_RS13930 (Dda3937_04173) | 3166374..3166659 | + | 286 | Protein_2795 | transposase | - |
| DDA3937_RS13935 (Dda3937_04174) | 3167522..3167932 | + | 411 | WP_148226884.1 | hypothetical protein | - |
| DDA3937_RS13940 (Dda3937_04175) | 3167995..3168390 | + | 396 | WP_013318616.1 | hypothetical protein | - |
| DDA3937_RS13945 (Dda3937_04176) | 3168404..3169720 | + | 1317 | WP_013318617.1 | hypothetical protein | - |
| DDA3937_RS22360 (Dda3937_04177) | 3169733..3170605 | + | 873 | WP_071819884.1 | deoxyribonuclease | - |
| DDA3937_RS23265 (Dda3937_04178) | 3170602..3171237 | + | 636 | WP_013318619.1 | hypothetical protein | - |
| DDA3937_RS13950 (Dda3937_04179) | 3171273..3174899 | + | 3627 | WP_013318620.1 | hypothetical protein | - |
| DDA3937_RS13955 (Dda3937_01879) | 3174896..3187930 | + | 13035 | WP_071819885.1 | LysM peptidoglycan-binding domain-containing protein | - |
| DDA3937_RS23525 | 3188191..3188484 | + | 294 | Protein_2803 | integrase | - |
| DDA3937_RS23270 (Dda3937_01877) | 3188482..3188754 | + | 273 | Protein_2804 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| DDA3937_RS13965 (Dda3937_01876) | 3188751..3189065 | - | 315 | WP_013318624.1 | CcdB family protein | Toxin Detail |
| DDA3937_RS13970 (Dda3937_01875) | 3189068..3189304 | - | 237 | WP_013318625.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| DDA3937_RS13975 (Dda3937_01874) | 3189619..3190563 | - | 945 | WP_033111950.1 | DUF1738 domain-containing protein | - |
| DDA3937_RS13980 (Dda3937_01873) | 3191278..3192597 | + | 1320 | Protein_2808 | TerB N-terminal domain-containing protein | - |
| DDA3937_RS22365 | 3192585..3193010 | + | 426 | Protein_2809 | DEAD/DEAH box helicase | - |
| DDA3937_RS13990 (Dda3937_01871) | 3193712..3195330 | - | 1619 | Protein_2810 | TIGR04141 family sporadically distributed protein | - |
| DDA3937_RS22370 (Dda3937_01870) | 3195352..3195999 | - | 648 | WP_013318631.1 | His-Xaa-Ser repeat protein HxsA | - |
| DDA3937_RS13995 (Dda3937_01869) | 3195996..3197108 | - | 1113 | WP_013318632.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| DDA3937_RS14000 (Dda3937_01868) | 3197101..3198495 | - | 1395 | WP_013318633.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| DDA3937_RS14005 (Dda3937_01867) | 3198492..3198767 | - | 276 | WP_033111952.1 | His-Xaa-Ser system protein HxsD | - |
| DDA3937_RS14010 (Dda3937_01866) | 3199257..3199763 | - | 507 | WP_033111953.1 | hypothetical protein | - |
| DDA3937_RS22820 | 3200494..3200978 | + | 485 | Protein_2816 | IS3 family transposase IS1400 | Transposase |
| DDA3937_RS14025 (Dda3937_01863) | 3201721..3202968 | + | 1248 | WP_013318640.1 | glycosyltransferase | - |
| DDA3937_RS14030 (Dda3937_01862) | 3203273..3205036 | + | 1764 | WP_013318641.1 | gamma-glutamyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Dickeya dadantii strain XJ12 | Integrative and Conjugative Element | TA263714, TA263715 | NZ_CP110362 | 427843..502453 | 0 |