NC_0140071..190974

MGE detailed information

MGE type: Non-Mobilizable plasmid        MGE length: 190974 bp
Accession: NC_014007        Location: 1..190974         Organism: Sphingobium japonicum UT26S       Replicon: plasmid pCHQ1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SJA_RS19540 () 76..1164 + 1089 WP_007688083.1 replication initiation protein -
SJA_RS19545 () 1360..2562 + 1203 WP_007688084.1 Chromosome-partitioning ATPase Soj VF
SJA_RS19550 () 2610..3623 + 1014 WP_013849890.1 ParB/RepB/Spo0J family partition protein -
SJA_RS19555 () 3688..4038 + 351 WP_007688086.1 hypothetical protein -
SJA_RS19560 () 4083..4766 - 684 WP_013041559.1 RES family NAD+ phosphorylase -
SJA_RS19565 () 4766..5164 - 399 WP_007686501.1 MbcA/ParS/Xre antitoxin family protein -
SJA_RS19570 () 5261..6427 - 1167 WP_013041560.1 hypothetical protein -
SJA_RS22250 () 6556..6744 + 189 WP_148225625.1 hypothetical protein -
SJA_RS19575 () 6722..9679 - 2958 WP_011627729.1 Tn3 family transposase TnpA_ISAzs17 Transposase
SJA_RS19580 () 9819..10370 + 552 WP_041386225.1 Tn3 family transposase ISPsy42 Transposase
SJA_RS19585 () 10367..11155 + 789 WP_013039098.1 Sulfoacetaldehyde reductase VF
SJA_RS22720 () 11279..11371 + 93 Protein_11 IS5/IS1182 family transposase -
SJA_RS19590 () 11833..12165 - 333 WP_007682049.1 BrnA antitoxin family protein Antitoxin Detail
SJA_RS19595 () 12146..12454 - 309 WP_007682056.1 BrnT family toxin Toxin Detail
SJA_RS19600 () 12628..13392 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
SJA_RS19605 () 13589..14860 + 1272 Protein_15 Tn3 family transposase TnpA_ISMpo10 Transposase
SJA_RS21575 () 14891..15133 - 243 Protein_16 hypothetical protein -
SJA_RS19610 () 15555..15929 + 375 WP_013041565.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
SJA_RS19615 () 15926..16252 + 327 WP_006964370.1 helix-turn-helix domain-containing protein Antitoxin Detail
SJA_RS19620 () 16252..16494 + 243 WP_013041566.1 hypothetical protein -
SJA_RS19625 () 16487..16786 + 300 WP_013041567.1 hypothetical protein -
SJA_RS19630 () 16807..17919 - 1113 WP_013041568.1 hypothetical protein VF
SJA_RS19635 () 17922..18917 - 996 Protein_22 P-type conjugative transfer protein TrbL -
SJA_RS22270 () 18981..19088 + 108 Protein_23 IS6 family transposase -
SJA_RS19640 () 19142..19906 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
SJA_RS19645 () 19935..20990 + 1056 WP_013041570.1 Solvent efflux pump outer membrane protein SrpC VF
SJA_RS19650 () 21122..21508 + 387 WP_148225626.1 hypothetical protein -
SJA_RS19655 () 21523..21918 + 396 WP_013041572.1 CopG family transcriptional regulator -
SJA_RS19660 () 21915..22877 + 963 WP_013041573.1 tyrosine-type recombinase/integrase -
SJA_RS19665 () 22874..23494 - 621 WP_013041574.1 histidine phosphatase family protein -
SJA_RS19670 () 23504..23785 - 282 WP_004212931.1 type II toxin-antitoxin system YafQ family toxin Toxin Detail
SJA_RS19675 () 23772..24038 - 267 WP_004212930.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin Detail
SJA_RS19680 () 24469..25110 + 642 WP_013041576.1 transcription elongation protein SprT -
SJA_RS19685 () 25186..25839 + 654 WP_013041577.1 Chromosome-partitioning ATPase Soj VF
SJA_RS19690 () 25836..26150 + 315 WP_013041578.1 hypothetical protein -
SJA_RS19695 () 26232..26696 + 465 WP_031309919.1 GNAT family N-acetyltransferase -
SJA_RS19700 () 26786..27436 - 651 Protein_36 replication initiator protein A -
SJA_RS19705 () 27485..28249 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
SJA_RS22670 () 28221..28304 - 84 Protein_38 transposase -
SJA_RS19710 () 28583..29704 - 1122 WP_013041582.1 phosphoadenosine phosphosulfate reductase family protein -
SJA_RS19715 () 29701..30153 - 453 WP_013041583.1 hypothetical protein -
SJA_RS19720 () 30150..30614 - 465 WP_013041584.1 hypothetical protein -
SJA_RS19725 () 30626..31273 - 648 WP_013041585.1 hypothetical protein -
SJA_RS19730 () 31431..31919 - 489 WP_013041586.1 hypothetical protein -
SJA_RS19735 () 32037..32228 + 192 WP_148225643.1 hypothetical protein -
SJA_RS22280 () 32259..32546 - 288 WP_041386970.1 hypothetical protein -
SJA_RS22725 () 33512..33700 - 189 Protein_46 hypothetical protein -
SJA_RS19755 () 34266..34796 - 531 WP_013041591.1 hypothetical protein -
SJA_RS19760 () 34907..35455 - 549 WP_013041592.1 hypothetical protein -
SJA_RS21605 () 35481..35981 - 501 WP_013041593.1 hypothetical protein -
SJA_RS19770 () 36038..36739 - 702 WP_013041594.1 hypothetical protein -
SJA_RS19775 () 37003..37464 - 462 WP_013041596.1 hypothetical protein -
SJA_RS21615 () 37797..38030 - 234 Protein_52 hypothetical protein -
SJA_RS19780 () 38027..40429 - 2403 WP_013041597.1 DNA cytosine methyltransferase -
SJA_RS19785 () 40593..40826 - 234 WP_013041599.1 hypothetical protein -
SJA_RS19790 () 40897..41925 - 1029 WP_013041600.1 hypothetical protein -
SJA_RS19795 () 41942..42772 - 831 WP_013041601.1 hypothetical protein -
SJA_RS19800 () 42924..43154 - 231 WP_013041602.1 hypothetical protein -
SJA_RS19805 () 43322..43831 - 510 WP_013041603.1 GNAT family N-acetyltransferase -
SJA_RS19810 () 43828..44118 - 291 WP_013041604.1 DUF1778 domain-containing protein -
SJA_RS19815 () 44328..44711 - 384 WP_013041605.1 type II toxin-antitoxin system VapC family toxin -
SJA_RS21625 () 44708..44965 - 258 WP_013041606.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
SJA_RS19820 () 45204..45731 - 528 WP_013041607.1 acetyltransferase Toxin Detail
SJA_RS19825 () 45728..46006 - 279 WP_013041608.1 DUF1778 domain-containing protein Antitoxin Detail
SJA_RS19830 () 46426..46737 - 312 WP_013041609.1 hypothetical protein -
SJA_RS20940 () 46752..47513 - 762 WP_013041610.1 hypothetical protein -
SJA_RS19840 () 47637..48620 - 984 WP_013041611.1 DUF1738 domain-containing protein -
SJA_RS19845 () 48695..52963 - 4269 WP_013041612.1 strawberry notch family protein -
SJA_RS19850 () 53182..55212 - 2031 WP_013041613.1 ParB/RepB/Spo0J family partition protein -
SJA_RS19855 () 55345..56244 - 900 WP_013041614.1 toprim domain-containing protein -
SJA_RS19860 () 56758..57642 + 885 WP_013041616.1 MucR family transcriptional regulator -
SJA_RS19865 () 57828..58124 + 297 WP_013041617.1 hypothetical protein -
SJA_RS21630 () 58215..58472 - 258 WP_148225644.1 hypothetical protein -
SJA_RS19870 () 58561..59127 - 567 WP_013041619.1 type II toxin-antitoxin system VapC family toxin -
SJA_RS19875 () 59111..59359 - 249 WP_148225645.1 hypothetical protein -
SJA_RS19885 () 59920..60171 + 252 WP_013041622.1 hypothetical protein -
SJA_RS21635 () 60191..60640 - 450 WP_013041623.1 sigma-70 region 4 domain-containing protein -
SJA_RS19895 () 60903..61529 + 627 WP_013041624.1 4-coumaroyl-homoserine lactone synthase VF
SJA_RS19900 () 61535..62437 + 903 WP_148225646.1 phytanoyl-CoA dioxygenase family protein -
SJA_RS19905 () 62463..62921 + 459 WP_148225627.1 MarR family transcriptional regulator -
SJA_RS19910 () 63111..63386 + 276 WP_013041627.1 HU family DNA-binding protein -
SJA_RS19915 () 63629..63820 - 192 WP_013041628.1 hypothetical protein -
SJA_RS19920 () 64018..65035 + 1018 Protein_82 NADP-dependent oxidoreductase -
SJA_RS19925 () 65032..65539 - 508 Protein_83 DUF1810 domain-containing protein -
SJA_RS19930 () 65581..65850 + 270 WP_013041631.1 prevent-host-death protein -
SJA_RS21640 () 65847..66302 + 456 WP_013041632.1 type II toxin-antitoxin system VapC family toxin -
SJA_RS19935 () 66941..67507 + 567 WP_148225628.1 RNA polymerase sigma factor -
SJA_RS19940 () 67573..68499 + 927 WP_161601891.1 FecR domain-containing protein -
SJA_RS19945 () 68575..71145 + 2571 WP_013041635.1 TonB-dependent receptor -
SJA_RS19960 () 73267..74802 - 1536 WP_161601892.1 asparagine synthase C-terminal domain-containing protein -
SJA_RS19965 () 75012..75665 - 654 WP_013041638.1 lasso peptide biosynthesis B2 protein -
SJA_RS22290 () 75728..75868 - 141 WP_013041639.1 benenodin family lasso peptide -
SJA_RS21650 () 76044..76661 - 618 WP_013041640.1 GntR family transcriptional regulator -
SJA_RS19970 () 76671..77159 - 489 WP_148225630.1 helix-turn-helix domain-containing protein -
SJA_RS19975 () 77248..77670 - 423 WP_013041642.1 hypothetical protein -
SJA_RS19980 () 77958..78287 + 330 WP_148225631.1 hypothetical protein -
SJA_RS19985 () 78284..79072 + 789 WP_013041644.1 DsbC family protein -
SJA_RS19990 () 79267..79581 + 315 WP_013041645.1 hypothetical protein -
SJA_RS19995 () 79698..79964 + 267 WP_013041646.1 membrane protein -
SJA_RS20000 () 79973..80608 + 636 WP_013041647.1 sex pilus assembly and synthesis protein -
SJA_RS20005 () 80595..81383 + 789 WP_013041648.1 type-F conjugative transfer system secretin TraK -
SJA_RS20010 () 81380..82708 + 1329 WP_013041649.1 TraB/VirB10 family protein -
SJA_RS20015 () 82708..83343 + 636 WP_013041650.1 TraV family lipoprotein -
SJA_RS20020 () 83340..85859 + 2520 WP_013041651.1 TraC family protein -
SJA_RS20025 () 85865..86191 + 327 WP_013041652.1 hypothetical protein -
SJA_RS20030 () 86188..86430 + 243 WP_013041653.1 hypothetical protein -
SJA_RS20035 () 86486..87079 + 594 WP_148225647.1 conjugal transfer protein TraW -
SJA_RS20040 () 87076..88089 + 1014 WP_013041655.1 TraU family protein -
SJA_RS20045 () 88188..88430 + 243 WP_013041656.1 hypothetical protein -
SJA_RS20050 () 88427..90349 + 1923 WP_013041657.1 hypothetical protein -
SJA_RS20055 () 90346..91443 + 1098 WP_013041658.1 conjugal transfer protein TraN -
SJA_RS20060 () 91469..92299 + 831 WP_148225632.1 conjugal transfer protein TrbC -
SJA_RS20065 () 92271..92867 + 597 WP_013041660.1 S26 family signal peptidase -
SJA_RS20070 () 92864..93763 + 900 WP_013041661.1 conjugal transfer protein TraF -
SJA_RS20075 () 93802..94200 - 399 WP_013041662.1 type II toxin-antitoxin system VapC family toxin -
SJA_RS20080 () 94197..94445 - 249 WP_013041663.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
SJA_RS20085 () 94668..95267 + 600 WP_013041664.1 hypothetical protein -
SJA_RS20090 () 95320..96741 + 1422 WP_049775278.1 conjugal transfer protein TraH -
SJA_RS20095 () 96746..100474 + 3729 WP_013041666.1 conjugal transfer protein TraG N-terminal domain-containing protein -
SJA_RS21655 () 100471..100938 - 468 WP_013041667.1 hypothetical protein -
SJA_RS21010 () 101521..102138 + 618 WP_161601893.1 nucleotidyltransferase family protein -
SJA_RS22295 () 102324..102518 + 195 WP_148225634.1 hypothetical protein -
SJA_RS22410 () 102525..102698 + 174 WP_154651063.1 hypothetical protein -
SJA_RS22730 () 102870..103079 + 210 WP_193377944.1 hypothetical protein -
SJA_RS20115 () 103133..103543 - 411 WP_041386965.1 HPP family protein -
SJA_RS20120 () 103686..105029 - 1344 WP_013041674.1 glutathione-disulfide reductase -
SJA_RS20125 () 105130..105966 - 837 WP_013041675.1 S-formylglutathione hydrolase -
SJA_RS20130 () 106000..106398 - 399 WP_148225636.1 VOC family protein -
SJA_RS20135 () 106644..107753 - 1110 WP_013041678.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
SJA_RS20140 () 107851..108729 + 879 WP_013041679.1 LysR family transcriptional regulator -
SJA_RS20145 () 108786..109706 - 921 WP_013041680.1 HTH-type transcriptional activator Btr VF
SJA_RS20150 () 109868..110833 - 966 WP_013041681.1 PDR/VanB family oxidoreductase -
SJA_RS20155 () 110947..111987 - 1041 WP_013035740.1 2,5-dichlorohydroquinone reductive dechlorinase -
SJA_RS20160 () 112047..112679 - 633 WP_007686013.1 hypothetical protein -
SJA_RS20165 () 112687..113403 - 717 WP_007686010.1 esterase -
SJA_RS20170 () 113400..114209 - 810 WP_013041682.1 alpha/beta hydrolase -
SJA_RS20175 () 114235..115200 - 966 WP_007686007.1 chlorohydroquinone/hydroquinone 1,2-dioxygenase -
SJA_RS20180 () 115332..116243 + 912 WP_013041683.1 LysR family transcriptional regulator -
SJA_RS20185 () 116338..118893 - 2556 WP_013041684.1 Pesticin receptor VF
SJA_RS22470 () 119085..119609 - 525 WP_007685997.1 hypothetical protein -
SJA_RS22475 () 119886..120092 - 207 Protein_140 Rieske 2Fe-2S domain-containing protein -
SJA_RS21685 () 120511..120723 - 213 WP_013041687.1 putative acetyl-CoA acetyltransferase -
SJA_RS20195 () 120791..121153 - 363 WP_013041688.1 cupin domain-containing protein -
SJA_RS22755 () 121168..121497 - 330 WP_081440728.1 hypothetical protein -
SJA_RS21695 () 121447..122307 + 861 WP_013041689.1 putative DNA-binding protein -
SJA_RS21700 () 122315..122479 + 165 Protein_145 IS1182 family transposase ISGdi16 Transposase
SJA_RS20205 () 122659..123564 + 906 WP_013041691.1 HTH-type transcriptional regulator CynR VF
SJA_RS20210 () 123744..124508 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
SJA_RS22320 () 124527..125000 - 474 WP_041386966.1 hypothetical protein -
SJA_RS22520 () 125334..125747 + 414 WP_148225638.1 hypothetical protein -
SJA_RS20220 () 125753..126868 + 1116 Protein_150 transposase -
SJA_RS20225 () 127152..127796 - 645 WP_013041695.1 HTH-type transcriptional regulator AcrR VF
SJA_RS20965 () 128088..128687 + 600 WP_161601894.1 CerR family C-terminal domain-containing protein -
SJA_RS20235 () 128858..129913 - 1056 WP_013041697.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
SJA_RS22325 () 129910..131097 - 1188 WP_148225641.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
SJA_RS20245 () 131101..131754 - 654 WP_013041699.1 TetR/AcrR family transcriptional regulator -
SJA_RS20250 () 131843..133264 + 1422 WP_013041700.1 Outer membrane protein OprM VF
SJA_RS20255 () 133278..134429 + 1152 WP_013041701.1 putative multidrug resistance protein EmrK VF
SJA_RS20260 () 134497..135966 + 1470 WP_148225648.1 Multidrug export protein EmrB VF
SJA_RS20265 () 136056..136730 + 675 WP_013041703.1 TetR/AcrR family transcriptional regulator -
SJA_RS20270 () 136796..137725 + 930 WP_013041704.1 HTH-type transcriptional regulator GltC VF
SJA_RS20275 () 137722..137973 - 252 WP_013041705.1 DUF2274 domain-containing protein -
SJA_RS20280 () 137976..139202 - 1227 WP_013041706.1 Type IV secretion system protein virB10 VF
SJA_RS20285 () 139199..140248 - 1050 WP_013041707.1 P-type conjugative transfer protein TrbG -
SJA_RS20290 () 140245..140928 - 684 WP_013041708.1 conjugal transfer protein TrbF -
SJA_RS20295 () 140928..142286 - 1359 WP_013041709.1 P-type conjugative transfer protein TrbL -
SJA_RS20300 () 142289..142624 - 336 WP_013041710.1 putative entry exclusion protein TrbK-alt -
SJA_RS20305 () 142635..143399 - 765 WP_013041711.1 P-type conjugative transfer protein TrbJ -
SJA_RS20310 () 143396..145834 - 2439 WP_013041712.1 conjugal transfer protein TrbE -
SJA_RS20315 () 145845..146126 - 282 WP_013041713.1 VirB3 family type IV secretion system protein -
SJA_RS20320 () 146126..146458 - 333 WP_013041714.1 TrbC/VirB2 family protein -
SJA_RS20325 () 146455..147438 - 984 WP_013041715.1 Type IV secretion system protein VirB11 VF
SJA_RS20330 () 147698..148132 - 435 WP_013041716.1 hypothetical protein -
SJA_RS20335 () 148142..150145 - 2004 WP_013041717.1 Conjugal transfer protein TraG VF
SJA_RS20340 () 150171..151910 - 1740 WP_013041718.1 hypothetical protein Relaxase
SJA_RS20345 () 152155..152919 - 765 WP_013041719.1 Soluble lytic murein transglycosylase VF
SJA_RS20350 () 152923..153270 - 348 WP_013041720.1 DUF736 domain-containing protein -
SJA_RS20355 () 153317..153862 - 546 WP_013041721.1 S26 family signal peptidase -
SJA_RS20360 () 153859..154377 - 519 WP_013041722.1 DUF2840 domain-containing protein -
SJA_RS20365 () 154374..154628 - 255 WP_013041723.1 hypothetical protein -
SJA_RS20370 () 154625..155263 - 639 WP_013041724.1 Chromosome-partitioning ATPase Soj VF
SJA_RS20375 () 155472..156359 - 888 WP_013041725.1 replication initiator protein A -
SJA_RS20380 () 156371..156646 - 276 WP_013041726.1 helix-turn-helix domain-containing protein -
SJA_RS20385 () 156774..157277 - 504 WP_148225649.1 DUF2285 domain-containing protein -
SJA_RS20390 () 157660..157929 - 270 WP_021223117.1 DUF2285 domain-containing protein -
SJA_RS20395 () 158045..158287 - 243 WP_013041729.1 helix-turn-helix transcriptional regulator -
SJA_RS20400 () 158474..158800 - 327 WP_013041730.1 DUF736 domain-containing protein -
SJA_RS20405 () 159361..159804 - 444 WP_013041732.1 hypothetical protein -
SJA_RS22675 () 159946..160113 - 168 WP_021223113.1 hypothetical protein -
SJA_RS20410 () 160427..160636 + 210 WP_013041735.1 hypothetical protein -
SJA_RS20415 () 160710..161633 - 924 WP_013041736.1 DUF2493 domain-containing protein -
SJA_RS20420 () 161927..162961 - 1035 WP_013041737.1 toprim domain-containing protein -
SJA_RS20425 () 162961..167298 - 4338 WP_013041738.1 strawberry notch family protein -
SJA_RS20430 () 167458..168459 - 1002 WP_013041739.1 hypothetical protein -
SJA_RS20435 () 168766..169047 + 282 WP_037492938.1 hypothetical protein -
SJA_RS20440 () 169054..169698 - 645 WP_013041741.1 hypothetical protein -
SJA_RS20445 () 169691..170107 - 417 WP_013041742.1 hypothetical protein -
SJA_RS20450 () 170179..170451 - 273 WP_013041743.1 hypothetical protein -
SJA_RS20455 () 170448..170861 - 414 WP_013041744.1 hypothetical protein -
SJA_RS20460 () 170931..171152 - 222 WP_013041745.1 hypothetical protein -
SJA_RS20465 () 171209..173341 - 2133 WP_013041746.1 ParB/RepB/Spo0J family partition protein -
SJA_RS20470 () 173636..173926 + 291 WP_013041748.1 hypothetical protein -
SJA_RS20475 () 173998..174759 - 762 WP_021316399.1 hypothetical protein -
SJA_RS20480 () 174759..175130 - 372 WP_013041750.1 DUF2958 domain-containing protein -
SJA_RS20485 () 175127..175345 - 219 Protein_204 antirestriction protein ArdC -
SJA_RS20490 () 175402..176304 - 903 WP_013039035.1 DUF1738 domain-containing protein -
SJA_RS20495 () 176349..178574 - 2226 WP_013039034.1 integrase -
SJA_RS20500 () 178571..180358 - 1788 WP_013039033.1 hypothetical protein -
SJA_RS20505 () 180355..181725 - 1371 WP_193377932.1 IS91 family transposase ISAzo26 Transposase
SJA_RS20510 () 181900..182646 - 747 WP_013041752.1 DUF1738 domain-containing protein -
SJA_RS20515 () 182739..184751 - 2013 WP_007688079.1 ParB/RepB/Spo0J family partition protein -
SJA_RS20520 () 184863..189062 - 4200 WP_013041753.1 strawberry notch family protein -
SJA_RS20525 () 189129..189995 - 867 WP_007688081.1 toprim domain-containing protein -
SJA_RS20530 () 190057..190383 - 327 WP_013041754.1 single-stranded DNA-binding protein -
SJA_RS21715 () 190463..190663 + 201 WP_013041755.1 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance