MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 53948 bp
Accession: NC_003028 Location: 968351..1022298 Organism: Streptococcus pneumoniae TIGR4 Replicon: chromosome
Accession: NC_003028 Location: 968351..1022298 Organism: Streptococcus pneumoniae TIGR4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SP_RS05065 (SP_1020) | 963452..964531 | + | 1080 | WP_001028831.1 | peptide chain release factor 1 | - |
| SP_RS05070 (SP_1021) | 964531..965370 | + | 840 | WP_000761894.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| SP_RS05075 (SP_1022) | 965354..965956 | + | 603 | WP_000969302.1 | threonylcarbamoyl-AMP synthase | - |
| SP_RS05080 (SP_1023) | 965958..966389 | + | 432 | WP_000942962.1 | GNAT family N-acetyltransferase | - |
| SP_RS05085 (SP_1024) | 966451..967707 | + | 1257 | WP_000575527.1 | serine hydroxymethyltransferase | - |
| SP_RS05090 (SP_1025) | 967715..968689 | + | 975 | WP_000356096.1 | nucleoid-associated protein | - |
| SP_RS05095 (SP_1026) | 968689..969303 | + | 615 | WP_000476386.1 | cell wall hydrolase Pmp23 | - |
| SP_RS05100 (SP_1027) | 969377..970351 | + | 975 | WP_001227736.1 | DUF1002 domain-containing protein | - |
| SP_RS05105 (SP_1029) | 970425..972056 | + | 1632 | WP_000914584.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| SP_RS05110 | 972270..972512 | + | 243 | WP_000710802.1 | hypothetical protein | - |
| SP_RS05115 (SP_1030) | 972795..973013 | + | 219 | WP_001207345.1 | helix-turn-helix transcriptional regulator | - |
| SP_RS05120 (SP_1032) | 973406..974431 | + | 1026 | WP_000790743.1 | iron-siderophore ABC transporter substrate-binding protein | - |
| SP_RS05125 (SP_1033) | 974421..975428 | + | 1008 | WP_001244687.1 | Ferric enterobactin transport system permease protein FepD | VF |
| SP_RS05130 (SP_1034) | 975428..976435 | + | 1008 | WP_001180357.1 | putative siderophore transport system permease protein YfhA | VF |
| SP_RS05135 (SP_1035) | 976435..977229 | + | 795 | WP_000677519.1 | Petrobactin import ATP-binding protein FpuD | VF |
| SP_RS12080 | 977617..978006 | + | 390 | WP_074017679.1 | restriction endonuclease subunit S | - |
| SP_RS12775 | 977972..978286 | + | 315 | WP_161801538.1 | hypothetical protein | - |
| SP_RS13020 (SP_1039) | 978970..979131 | + | 162 | WP_000368174.1 | hypothetical protein | - |
| SP_RS05150 (SP_1040) | 979223..980902 | + | 1680 | WP_000031829.1 | hypothetical protein ; Integrase | Integrase |
| SP_RS05155 (SP_1041) | 981170..981736 | + | 567 | WP_000234983.1 | hypothetical protein | - |
| SP_RS05160 (SP_1042) | 982058..982246 | + | 189 | WP_000179769.1 | hypothetical protein | - |
| SP_RS05165 (SP_1043) | 982308..983066 | + | 759 | WP_000262024.1 | ATP-grasp domain-containing protein | - |
| SP_RS05170 (SP_1044) | 983124..983978 | + | 855 | WP_000900015.1 | ADP-ribosylglycohydrolase family protein | - |
| SP_RS05175 (SP_1045) | 984090..984974 | + | 885 | WP_000710115.1 | diacylglycerol kinase family lipid kinase | - |
| SP_RS12090 | 985138..985500 | + | 363 | WP_000423476.1 | alpha amylase N-terminal ig-like domain-containing protein | - |
| SP_RS05180 (SP_1046) | 985481..986877 | + | 1397 | Protein_973 | glycoside hydrolase family 13 protein | - |
| SP_RS05185 (SP_1047) | 986963..987280 | + | 318 | WP_000995815.1 | hypothetical protein | - |
| SP_RS05190 (SP_1048) | 987326..987607 | + | 282 | WP_000266234.1 | hypothetical protein | - |
| SP_RS05195 (SP_1050) | 988052..988528 | + | 477 | WP_000579608.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SP_RS05200 (SP_1051) | 988528..989289 | + | 762 | WP_000405360.1 | toxin PezT | Toxin Detail |
| SP_RS05205 (SP_1052) | 989317..990473 | + | 1157 | Protein_978 | hypothetical protein | - |
| SP_RS05215 (SP_1054) | 991304..991660 | + | 357 | WP_000817623.1 | hypothetical protein | - |
| SP_RS05220 (SP_1055) | 991665..992030 | + | 366 | WP_000401239.1 | MobC family plasmid mobilization relaxosome protein | - |
| SP_RS05225 (SP_1056) | 992017..993840 | + | 1824 | WP_000237143.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SP_RS05230 (SP_1057) | 993954..994820 | + | 867 | WP_000537005.1 | helix-turn-helix domain-containing protein | - |
| SP_RS05235 (SP_1059) | 995411..995662 | + | 252 | WP_000098314.1 | hypothetical protein | - |
| SP_RS05240 (SP_1060) | 995891..996193 | + | 303 | WP_000792536.1 | hypothetical protein | - |
| SP_RS05245 (SP_1061) | 996190..997536 | + | 1347 | WP_001105427.1 | protein kinase | - |
| SP_RS05250 (SP_1062) | 997550..998467 | + | 918 | WP_000995574.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| SP_RS05255 (SP_1063) | 998464..999264 | + | 801 | WP_000642567.1 | ABC transporter permease | - |
| SP_RS05260 (SP_1064) | 999422..999895 | + | 474 | WP_001206386.1 | IS200-IS605 family transposase ISSpn6 | Transposase |
| SP_RS05265 | 1000152..1000373 | + | 222 | WP_000286244.1 | helix-turn-helix domain-containing protein | - |
| SP_RS12100 (SP_1066) | 1000820..1001122 | + | 303 | Protein_990 | IS5 family transposase IS1381A | Transposase |
| SP_RS05275 (SP_1067) | 1001278..1002507 | + | 1230 | WP_000703352.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| SP_RS05280 (SP_1068) | 1002527..1005223 | + | 2697 | WP_000058203.1 | phosphoenolpyruvate carboxylase | - |
| SP_RS05285 (SP_1069) | 1005636..1006640 | + | 1005 | WP_000792163.1 | hypothetical protein | VF |
| SP_RS05290 (SP_1070) | 1006709..1007575 | + | 867 | WP_000637238.1 | ABC transporter permease | - |
| SP_RS05295 (SP_1071) | 1007572..1008330 | + | 759 | WP_000125408.1 | ABC transporter ATP-binding protein | - |
| SP_RS05300 (SP_1072) | 1008420..1010180 | + | 1761 | WP_000227862.1 | DNA primase | - |
| SP_RS05305 (SP_1073) | 1010183..1011292 | + | 1110 | WP_000201898.1 | RNA polymerase sigma factor RpoD | - |
| SP_RS05310 (SP_1074) | 1011306..1011635 | + | 330 | WP_000331928.1 | metal-sulfur cluster assembly factor | - |
| SP_RS05315 (SP_1075) | 1011750..1012793 | + | 1044 | WP_000412280.1 | alpha-galactosylglucosyldiacylglycerol synthase | - |
| SP_RS05320 (SP_1076) | 1012809..1014134 | + | 1326 | WP_001219427.1 | glycosyltransferase family 4 protein | - |
| SP_RS05325 (SP_1077) | 1014165..1014341 | + | 177 | WP_001256250.1 | PspC domain-containing protein | - |
| SP_RS05330 (SP_1078) | 1014400..1014534 | + | 135 | WP_000863859.1 | DUF4044 domain-containing protein | - |
| SP_RS05335 (SP_1079) | 1014598..1015908 | + | 1311 | WP_000061641.1 | GTPase ObgE | - |
| SP_RS13025 (SP_1080) | 1015918..1016076 | + | 159 | WP_001808548.1 | hypothetical protein | - |
| SP_RS05345 (SP_1081) | 1017219..1018478 | + | 1260 | WP_001227083.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| SP_RS05350 (SP_1082) | 1018494..1019045 | + | 552 | WP_001028732.1 | GNAT family N-acetyltransferase | - |
| SP_RS05355 (SP_1083) | 1019038..1020315 | + | 1278 | WP_000033830.1 | CBS-HotDog domain-containing transcription factor SpxR | - |
| SP_RS05360 (SP_1084) | 1020331..1021191 | + | 861 | WP_000631543.1 | methionyl aminopeptidase | - |
| SP_RS12110 | 1021571..1022374 | + | 804 | Protein_1009 | IS5 family transposase | - |
| SP_RS05385 (SP_1087) | 1022565..1024856 | + | 2292 | WP_000992862.1 | DNA helicase PcrA | - |
| SP_RS05390 (SP_1088) | 1024899..1025579 | + | 681 | WP_000286922.1 | DNA repair protein RadC | - |
| SP_RS05395 (SP_1089) | 1025576..1026265 | - | 690 | WP_000743330.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| SP_RS05400 (SP_1090) | 1026283..1026924 | - | 642 | WP_000653403.1 | redox-sensing transcriptional repressor Rex | - |
| SP_RS05405 (SP_1092) | 1027007..1027222 | - | 216 | WP_000462487.1 | DUF4649 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus pneumoniae strain Xen35 | Integrative and Conjugative Element | TA89965 | NZ_CP025256 | 968351..1022298 | 0 | |
| Streptococcus pneumoniae strain TVO_TIGR4 | Integrative and Conjugative Element | TA117441 | NZ_CP035239 | 968612..1022558 | 0 | |
| Streptococcus pneumoniae TIGR4 | Integrative and Conjugative Element | TA229786 | NZ_CP089948 | 968612..1022558 | 0 |