SecReT4

T4SS
References

T4SS ID	774
Strain	Ruegeria sp. TM1040
Replicon	plasmid unnamed [Browse all T4SS(s) in this replicon]
Accession	NC_008042
Location	43437..45443; 60669..71754
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	2	1	1	1	1	1	0	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_008042
Region 1: 43437..45443

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	TM1040_3791	39882..40088 [+], 207	99077926	hypothetical protein
2	TM1040_3792	40650..41243 [+], 594	99077927	hypothetical protein
3	TM1040_3793	41230..43440 [+], 2211	99077928	relaxase/mobilization nuclease domain-containing protein
4	TM1040_3794	43437..45443 [+], 2007	99077929	TRAG protein	VirD4
5	TM1040_3795	45670..47667 [-], 1998	99077930	periplasmic sensor signal transduction histidine kinase
6	TM1040_3796	47907..48452 [-], 546	99077931	hypothetical protein

Region 2: 60669..71754

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	TM1040_3804	56206..56622 [+], 417	99077939	hypothetical protein
2	TM1040_3805	56625..57533 [+], 909	99077940	hypothetical protein
3	TM1040_3806	57539..58570 [+], 1032	99077941	hypothetical protein
4	TM1040_3807	58658..59440 [+], 783	99077942	hypothetical protein
5	TM1040_3808	59718..60518 [+], 801	99077943	LuxR family transcriptional regulator
6	TM1040_3809	60669..61748 [-], 1080	99077944	TrbL/VirB6 plasmid conjugal transfer protein	VirB6
7	TM1040_3810	61761..62174 [-], 414	99077945	hypothetical protein
8	TM1040_3811	62171..62365 [-], 195	99077946	hypothetical protein
9	TM1040_3812	62362..63348 [-], 987	99077947	type II secretion system protein E	VirB11
10	TM1040_3813	63353..64732 [-], 1380	99077948	conjugation TrbI-like protein	VirB10
11	TM1040_3814	64729..65424 [-], 696	99077949	conjugal transfer protein TrbG/VirB9/CagX	VirB9
12	TM1040_3815	65427..66080 [-], 654	99077950	VirB8	VirB8
13	TM1040_3816	66097..66906 [-], 810	99077951	hypothetical protein	VirB5
14	TM1040_3817	66906..68060 [-], 1155	99077952	lytic transglycosylase, catalytic	VirB1
15	TM1040_3818	68050..68217 [-], 168	99077953	hypothetical protein
16	TM1040_3819	68214..70589 [-], 2376	99077954	CagE, TrbE, VirB component of type IV transporter system	VirB4
17	TM1040_3820	70579..70824 [-], 246	99077955	type IV secretory pathway, VirB3-like	VirB3
18	TM1040_3821	70850..71143 [-], 294	99077956	VIRB2 type IV secretion	VirB2
19	TM1040_3822	71140..71754 [-], 615	99077957	lytic transglycosylase, catalytic	VirB1
20	TM1040_3823	71798..72151 [-], 354	99077958	hypothetical protein
21	TM1040_3824	72319..72615 [+], 297	99077959	hypothetical protein
22	TM1040_3825	72863..73168 [+], 306	99077960	hypothetical protein
23	TM1040_3826	73161..73388 [+], 228	99077961	hypothetical protein
24	TM1040_3827	73530..73781 [-], 252	99077962	hypothetical protein
25	TM1040_3828	73771..74475 [-], 705	99077963	short-chain dehydrogenase/reductase SDR
26	TM1040_3829	74574..75452 [+], 879	99077964	LysR family transcriptional regulator
27	TM1040_3830	75610..76341 [-], 732	99077965	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Moran MA; Belas R; Schell MA; Gonzalez JM; Sun F; Sun S; Binder BJ; Edmonds J; Ye W; Orcutt B; Howard EC; Meile C; Palefsky W; Goesmann A; Ren Q; Paulsen I; Ulrich LE; Thompson LS; Saunders E; Buchan A (2007). Ecological genomics of marine Roseobacters. Appl Environ Microbiol. 73(14):4559-69. [PudMed:17526795]

This literature contains bioinformatics investigation