SecReT4

T4SS
Effectors
References

T4SS ID	32
Strain	Helicobacter pylori SJM180
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_014560
Location	506195..536850
Name	Cag
Function	effector translocation
Classification	Type IVA; Type P
This T4SS is identified in this study.

T4SS components

Component	CagC	CagD	CagE	CagF	CagG	CagH	CagI	CagL	CagN
Number	1	1	1	1	1	1	1	1	1
Component	CagM	CagT	CagU	CagV	CagW	CagX	CagY	CagZ	Cagalpha
Number	1	1	1	1	1	1	1	1	1
Component	Cagbeta	Caggamma	Cagdelta
Number	1	1	1

The information of T4SS components from NC_014560

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HPSJM_02535	501879..503198 [+], 1320	308184287	hypothetical protein
2	HPSJM_02540	503203..504582 [+], 1380	308184288	glycolate oxidase, subunit GlcD
3	HPSJM_02545	504605..505369 [+], 765	308184289	dihydrodipicolinate reductase
4	HPSJM_02550	505656..505775 [+], 120	308184290	hypothetical protein
5	HPSJM_02555	505825..506052 [+], 228	308184291	cag pathogenicity island protein B
6	HPSJM_02560	506195..506542 [+], 348	308184292	cag pathogenicity island protein C	CagC
7	HPSJM_02565	506517..507167 [+], 651	308184293	cag pathogenicity island protein D	CagD
8	HPSJM_02570	507176..510127 [+], 2952	308184294	cag pathogenicity island protein E	CagE
9	HPSJM_02575	510129..510935 [+], 807	308184295	cag island protein	CagF
10	HPSJM_02580	510990..511418 [+], 429	308184296	cag pathogenicity island protein (cag21)	CagG
11	HPSJM_02585	511419..511616 [-], 198	308184297	hypothetical protein
12	HPSJM_02590	511615..512547 [+], 933	308184298	cag pathogenicity island protein H	CagH
13	HPSJM_02595	512558..513703 [+], 1146	308184299	cag pathogenicity island protein I	CagI
14	HPSJM_02600	513700..514413 [+], 714	308184300	cag pathogenicity island protein L	CagL
15	HPSJM_02605	514495..515415 [-], 921	308184301	cag island protein	CagN
16	HPSJM_02610	515430..516560 [-], 1131	308184302	cag island protein	CagM
17	HPSJM_02615	517762..518142 [+], 381	308184303	cag pathogenicity island protein Q
18	HPSJM_02620	518582..519181 [+], 600	308184304	CAG pathogenicity island protein 13
19	HPSJM_02625	519383..520225 [-], 843	308184305	CAG pathogenicity island protein 12	CagT
20	HPSJM_02630	520261..520917 [-], 657	308184306	cag island protein	CagU
21	HPSJM_02635	521298..522056 [+], 759	308184307	cag pathogenicity island protein V	CagV
22	HPSJM_02640	522061..523668 [+], 1608	308184308	cag pathogenicity island protein W	CagW
23	HPSJM_02645	523721..525286 [+], 1566	308184309	cag pathogenicity island protein X	CagX
24	HPSJM_02650	525301..530781 [+], 5481	308184310	cag island protein	CagY
25	HPSJM_02655	530916..531515 [+], 600	308184311	cag pathogenicity island protein (cag6)	CagZ
26	HPSJM_02660	531520..532512 [+], 993	308184312	cag island protein, DNA transfer protein	Cagalpha
27	HPSJM_02665	532521..534767 [+], 2247	308184313	cag island protein, DNA transfer protein	Cagbeta
28	HPSJM_02670	534886..535395 [-], 510	308184314	cag pathogenicity island protein Gamma	Caggamma
29	HPSJM_02675	535405..536850 [-], 1446	308184315	cag pathogenicity island protein 3	Cagdelta
30	HPSJM_02680	536850..537200 [-], 351	308184316	cag pathogenicity island protein Epsilon
31	HPSJM_02685	537308..537655 [-], 348	308184317	cag pathogenicity island protein (cag1)
32	HPSJM_02690	537827..538681 [+], 855	308184318	hypothetical protein
33	HPSJM_02695	538912..540357 [-], 1446	308184319	glutamine synthetase
34	HPSJM_02700	540581..540883 [+], 303	308184320	hypothetical protein
35	HPSJM_02705 (rplI)	541275..541724 [+], 450	308184321	50S ribosomal protein L9

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Effectors

CagA; Peptidoglycan

The information of protein effectors
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	*
1	HPSJM_02765	549621..553166 [+], 3546	308184331	cag pathogenicity island protein (cag26)	CagA

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_014560