SecReT4

T4SS
References

T4SS ID	18
Strain	Rhizobium etli CFN 42
Replicon	plasmid p42a [Browse all T4SS(s) in this replicon]
Accession	NC_007762
Location	34930..57076; 75279..77279; 138282..138650
Name	VirB
Function	NA
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	1	1	1	1	1
Component	VirB10	VirB11	VirD4
Number	1	2	1

The information of T4SS components from NC_007762
Region 1: 34930..57076

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RHE_PA00027	30219..32267 [+], 2049	86359732	short chain dehydrogenase
2	RHE_PA00028	32475..33188 [+], 714	86359733	glycerol-3-phosphate dehydrogenase (NAD(P)+) protein
3	RHE_PA00029	33640..33945 [-], 306	86359734	glycerol-3-phosphate dehydrogenase
4	RHE_PA00030	34023..34835 [-], 813	86359735	hypothetical protein
5	RHE_PA00031	34930..35274 [-], 345	86359736	hypothetical protein	VirB11
6	RHE_PA00032	35392..35793 [-], 402	86359737	hypothetical protein
7	RHE_PA00033 (repAa2)	35961..37169 [+], 1209	86359738	plasmid partitioning protein RepAa2
8	RHE_PA00034 (repBa2)	37169..37837 [+], 669	86359739	plasmid partitioning protein RepBa2
9	RHE_PA00035 (repCa2)	38449..39711 [+], 1263	86359740	plasmid replication protein RepCa2
10	RHE_PA00036	40433..40651 [+], 219	86359741	hypothetical protein
11	RHE_PA00037	40754..41293 [+], 540	86359742	hypothetical protein
12	RHE_PA00038	41293..43377 [+], 2085	86359743	insertion sequence transposase
13	RHE_PA00039	43331..43837 [+], 507	86359744	insertion sequence transposase
14	RHE_PA00040 (virF1)	43910..44521 [+], 612	86359745	virulence VirF1 protein
15	RHE_PA00041	44866..45252 [-], 387	86359746	hypothetical protein
16	RHE_PA00042 (virA)	45179..47689 [+], 2511	86359747	two-component VirA-like sensor kinase
17	RHE_PA00043 (virB1a)	47889..48626 [+], 738	86359748	type IV secretion system lytic transglycosylase VirB1	VirB1
18	RHE_PA00044 (virB3a)	48766..49092 [+], 327	86359749	type IV secretion system protein VirB3	VirB3
19	RHE_PA00045 (virB4a)	49092..51461 [+], 2370	86359750	type IV secretion system protein VirB4	VirB4
20	RHE_PA00046 (virB5a)	51478..52140 [+], 663	86359751	type IV secretion system protein VirB5	VirB5
21	RHE_PA00047 (virB6a)	52239..53126 [+], 888	86359752	type IV secretion system protein VirB6	VirB6
22	RHE_PA00048 (virB7a)	53156..53323 [+], 168	86359753	type IV secretion system lipoprotein VirB7	VirB7
23	RHE_PA00049 (virB8a)	53250..54023 [+], 774	86359754	type IV secretion system protein VirB8	VirB8
24	RHE_PA00050 (virB9a)	54020..54901 [+], 882	86359755	type IV secretion system protein VirB9	VirB9
25	RHE_PA00051 (virB10a)	54898..56001 [+], 1104	86359756	type IV secretion system protein VirB10	VirB10
26	RHE_PA00052 (virB11a)	56042..57076 [+], 1035	86359757	type IV secretion system protein VirB11	VirB11
27	RHE_PA00053 (virG)	57174..57914 [+], 741	86359758	two-component response regulator VirG
28	RHE_PA00054 (virC2)	57996..58613 [-], 618	86359759	crown gall tumor protein VirC2
29	RHE_PA00055 (virC1)	58616..59311 [-], 696	86359760	crown gall tumor protein VirC1
30	RHE_PA00056	60204..60947 [+], 744	86359761	IS4 insertion sequence transposase

Region 2: 75279..77279

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RHE_PA00067 (virD1)	71659..72105 [+], 447	86359769	type IV secretion system T-DNA border endonuclease VirD1
2	RHE_PA00068 (virD2)	72133..73377 [+], 1245	86359770	type IV secretion system T-DNA border endonuclease VirD2
3	RHE_PA00070 (virD4)	75279..77279 [+], 2001	86359771	type IV secretion system protein VirD4	VirD4
4	RHE_PA00071	77704..78954 [-], 1251	86359772	IS4 insertion sequence transposase
5	RHE_PA00072	79432..80250 [+], 819	86359773	insertion sequence ATP-binding protein
6	RHE_PA00073	80247..81128 [+], 882	86359774	IS21 family insertion sequence ATP-binding protein
7	RHE_PA00074	81362..81712 [+], 351	86359775	IS3 family insertion sequence transposase

Region 3: 138282..138650

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RHE_PA00125	134452..135711 [+], 1260	86359824	insertion sequence transposase
2	RHE_PA00126	135946..136503 [-], 558	86359825	insertion sequence transposase
3	RHE_PA00127	136895..137203 [-], 309	86359826	insertion sequence transposase
4	RHE_PA00128 (virB2a)	138282..138650 [+], 369	86359827	type IV secretion system pilin subunit VirB2	VirB2
5	RHE_PA00129	138825..139334 [+], 510	86359828	hypothetical protein
6	RHE_PA00130	139728..140234 [+], 507	86359829	hypothetical protein
7	RHE_PA00131	140228..141046 [-], 819	86359830	hypothetical protein
8	RHE_PA00132	141186..141506 [+], 321	86359831	hypothetical protein
9	RHE_PA00133	141737..142264 [-], 528	86359832	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Gonzalez V; Santamaria RI; Bustos P; Hernandez-Gonzalez I; Medrano-Soto A; Moreno-Hagelsieb G; Janga SC; Ramirez MA; Jimenez-Jacinto V; Collado-Vides J; Davila G (2006). The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. Proc Natl Acad Sci U S A. 103(10):3834-9. [PudMed:16505379]