StrainRhizobium etli CFN 42
Repliconplasmid p42a [Browse all T4SS(s) in this replicon]
Location34930..57076; 75279..77279; 138282..138650
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components

The information of T4SS components from NC_007762
Region 1: 34930..57076
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RHE_PA0002730219..32267 [+], 204986359732short chain dehydrogenase 
2RHE_PA0002832475..33188 [+], 71486359733glycerol-3-phosphate dehydrogenase (NAD(P)+) protein 
3RHE_PA0002933640..33945 [-], 30686359734glycerol-3-phosphate dehydrogenase 
4RHE_PA0003034023..34835 [-], 81386359735hypothetical protein 
5RHE_PA0003134930..35274 [-], 34586359736hypothetical protein  VirB11
6RHE_PA0003235392..35793 [-], 40286359737hypothetical protein 
7RHE_PA00033 (repAa2)35961..37169 [+], 120986359738plasmid partitioning protein RepAa2 
8RHE_PA00034 (repBa2)37169..37837 [+], 66986359739plasmid partitioning protein RepBa2 
9RHE_PA00035 (repCa2)38449..39711 [+], 126386359740plasmid replication protein RepCa2 
10RHE_PA0003640433..40651 [+], 21986359741hypothetical protein 
11RHE_PA0003740754..41293 [+], 54086359742hypothetical protein 
12RHE_PA0003841293..43377 [+], 208586359743insertion sequence transposase 
13RHE_PA0003943331..43837 [+], 50786359744insertion sequence transposase 
14RHE_PA00040 (virF1)43910..44521 [+], 61286359745virulence VirF1 protein 
15RHE_PA0004144866..45252 [-], 38786359746hypothetical protein 
16RHE_PA00042 (virA)45179..47689 [+], 251186359747two-component VirA-like sensor kinase 
17RHE_PA00043 (virB1a)47889..48626 [+], 73886359748type IV secretion system lytic transglycosylase VirB1  VirB1
18RHE_PA00044 (virB3a)48766..49092 [+], 32786359749type IV secretion system protein VirB3  VirB3
19RHE_PA00045 (virB4a)49092..51461 [+], 237086359750type IV secretion system protein VirB4  VirB4
20RHE_PA00046 (virB5a)51478..52140 [+], 66386359751type IV secretion system protein VirB5  VirB5
21RHE_PA00047 (virB6a)52239..53126 [+], 88886359752type IV secretion system protein VirB6  VirB6
22RHE_PA00048 (virB7a)53156..53323 [+], 16886359753type IV secretion system lipoprotein VirB7  VirB7
23RHE_PA00049 (virB8a)53250..54023 [+], 77486359754type IV secretion system protein VirB8  VirB8
24RHE_PA00050 (virB9a)54020..54901 [+], 88286359755type IV secretion system protein VirB9  VirB9
25RHE_PA00051 (virB10a)54898..56001 [+], 110486359756type IV secretion system protein VirB10  VirB10
26RHE_PA00052 (virB11a)56042..57076 [+], 103586359757type IV secretion system protein VirB11  VirB11
27RHE_PA00053 (virG)57174..57914 [+], 74186359758two-component response regulator VirG 
28RHE_PA00054 (virC2)57996..58613 [-], 61886359759crown gall tumor protein VirC2 
29RHE_PA00055 (virC1)58616..59311 [-], 69686359760crown gall tumor protein VirC1 
30RHE_PA0005660204..60947 [+], 74486359761IS4 insertion sequence transposase 
Region 2: 75279..77279
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RHE_PA00067 (virD1)71659..72105 [+], 44786359769type IV secretion system T-DNA border endonuclease VirD1 
2RHE_PA00068 (virD2)72133..73377 [+], 124586359770type IV secretion system T-DNA border endonuclease VirD2 
3RHE_PA00070 (virD4)75279..77279 [+], 200186359771type IV secretion system protein VirD4  VirD4
4RHE_PA0007177704..78954 [-], 125186359772IS4 insertion sequence transposase 
5RHE_PA0007279432..80250 [+], 81986359773insertion sequence ATP-binding protein 
6RHE_PA0007380247..81128 [+], 88286359774IS21 family insertion sequence ATP-binding protein 
7RHE_PA0007481362..81712 [+], 35186359775IS3 family insertion sequence transposase 
Region 3: 138282..138650
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RHE_PA00125134452..135711 [+], 126086359824insertion sequence transposase 
2RHE_PA00126135946..136503 [-], 55886359825insertion sequence transposase 
3RHE_PA00127136895..137203 [-], 30986359826insertion sequence transposase 
4RHE_PA00128 (virB2a)138282..138650 [+], 36986359827type IV secretion system pilin subunit VirB2  VirB2
5RHE_PA00129138825..139334 [+], 51086359828hypothetical protein 
6RHE_PA00130139728..140234 [+], 50786359829hypothetical protein 
7RHE_PA00131140228..141046 [-], 81986359830hypothetical protein 
8RHE_PA00132141186..141506 [+], 32186359831hypothetical protein 
9RHE_PA00133141737..142264 [-], 52886359832hypothetical protein 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gonzalez V; Santamaria RI; Bustos P; Hernandez-Gonzalez I; Medrano-Soto A; Moreno-Hagelsieb G; Janga SC; Ramirez MA; Jimenez-Jacinto V; Collado-Vides J; Davila G (2006). The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. Proc Natl Acad Sci U S A. 103(10):3834-9. [PudMed:16505379]