SecReT4
T4SS ID111
StrainEscherichia coli APEC O1
Repliconplasmid pAPEC-O1-ColBM [Browse all T4SS(s) in this replicon]
AccessionNC_009837
Location17533..50594
NameTra_F
FunctionNA
ClassificationType IVA; Type F
insolico This T4SS is identified in this study.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111101
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number111111111
ComponentTraY_FTrbC_FOrf169_F
Number111

The information of T4SS components from NC_009837
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1APECO1_O1CoBM17 (psiB)13494..13931 [+], 438157418100plasmid SOS inhibition protein B 
2APECO1_O1CoBM18 (psiA)13928..14647 [+], 720157418101plasmid SOS inhibition protein A 
3APECO1_O1CoBM19 (sok)14659..14883 [-], 225157418102hypothetical protein 
4APECO1_O1CoBM20 (mok)14869..15081 [+], 213157418103modulator of post-segregation killing protein 
5APECO1_O1CoBM2115305..15535 [+], 231157418104hypothetical protein 
6APECO1_O1CoBM2215532..15774 [+], 243157418105hypothetical protein 
7APECO1_O1CoBM2316007..16294 [+], 288157418106hypothetical protein 
8APECO1_O1CoBM2416301..17236 [+], 936157418107hypothetical protein 
9APECO1_O1CoBM2517533..18135 [-], 603157418108lytic transglycosylase  Orf169_F
10APECO1_O1CoBM26 (traM)18456..18839 [+], 384157418109conjugal transfer protein TraM  TraM_F
11APECO1_O1CoBM27 (traJ)19026..19715 [+], 690157418110conjugal transfer transcriptional regulator TraJ 
12APECO1_O1CoBM28 (traY)19808..20209 [+], 402157418111conjugal transfer protein TraY  TraY_F
13APECO1_O1CoBM29 (traA)20242..20607 [+], 366157418112conjugal transfer pilin subunit TraA  TraA_F
14APECO1_O1CoBM30 (traL)20622..20933 [+], 312157418113conjugal transfer pilus assembly protein TraL  TraL_F
15APECO1_O1CoBM31 (traE)20955..21521 [+], 567157418114conjugal transfer pilus assembly protein TraE  TraE_F
16APECO1_O1CoBM32 (traK)21508..22236 [+], 729157418115conjugal transfer protein TraK  TraK_F
17APECO1_O1CoBM33 (traB)22236..23663 [+], 1428157418116conjugal transfer pilus assembly protein TraB  TraB_F
18APECO1_O1CoBM34 (traP)23653..24243 [+], 591157418117conjugal transfer protein TraP 
19APECO1_O1CoBM35 (trbD)24197..24427 [+], 231157418118conjugal transfer protein TrbD 
20APECO1_O1CoBM36 (trbG)24439..24690 [+], 252157418119conjugal transfer protein TrbG 
21APECO1_O1CoBM37 (traV)24687..25202 [+], 516157418120conjugal transfer protein TraV  TraV_F
22APECO1_O1CoBM38 (traR)25337..25558 [+], 222157418121conjugal transfer protein TraR 
23APECO1_O1CoBM39 (traC)25718..28345 [+], 2628157418122conjugal transfer ATP-binding protein TraC  TraC_F
24APECO1_O1CoBM40 (trbI)28342..28728 [+], 387157418123conjugal transfer protein TrbI 
25APECO1_O1CoBM41 (traW)28725..29357 [+], 633229776984conjugal transfer pilus assembly protein TraW  TraW_F
26APECO1_O1CoBM42 (traU)29354..30346 [+], 993157418125conjugal transfer pilus assembly protein TraU  TraU_F
27APECO1_O1CoBM43 (trbC)30352..30993 [+], 642157418126conjugal transfer pilus assembly protein TrbC  TrbC_F
28APECO1_O1CoBM44 (traN)30990..32798 [+], 1809157418127conjugal transfer mating pair stabilization protein TraN  TraN_F
29APECO1_O1CoBM45 (trbE)32822..33082 [+], 261157418128conjugal transfer protein TrbE 
30APECO1_O1CoBM46 (traF)33045..33818 [+], 774157418129conjugal pilus assembly protein TraF  TraF_F
31APECO1_O1CoBM47 (trbA)33834..34181 [+], 348157418130conjugal transfer protein TrbA 
32APECO1_O1CoBM48 (artA)34183..34458 [-], 276157418131hypothetical protein 
33APECO1_O1CoBM49 (traQ)34584..34820 [+], 237157418132conjugal transfer pilin chaperone TraQ  TraQ_F
34APECO1_O1CoBM50 (trbB)34807..35352 [+], 546157418133conjugal transfer protein TrbB 
35APECO1_O1CoBM51 (trbJ)35282..35623 [+], 342157418134conjugal transfer protein TrbJ 
36APECO1_O1CoBM52 (trbF)35663..35968 [-], 306157418135hypothetical protein 
37APECO1_O1CoBM53 (traG)35989..40185 [+], 4197157418136hypothetical protein  TraG_F
38APECO1_O1CoBM54 (traS)40182..40691 [+], 510157418137conjugal transfer entry exclusion protein TraS 
39APECO1_O1CoBM55 (traT)40705..41436 [+], 732157418138conjugal transfer surface exclusion protein TraT 
40APECO1_O1CoBM56 (traD)41689..43842 [+], 2154157418139conjugal transfer protein TraD  TraD_F
41APECO1_O1CoBM57 (trbH)43842..44561 [+], 720157418140TrbH 
42APECO1_O1CoBM58 (traI)44537..49828 [+], 5292157418141conjugal transfer nickase/helicase TraI  TraI_F
43APECO1_O1CoBM59 (traX)49848..50594 [+], 747157418142conjugal transfer pilus acetylation protein TraX  TraX_F
44APECO1_O1CoBM6050653..51513 [+], 861157418143hypothetical protein 
45APECO1_O1CoBM61 (finO)51616..52176 [+], 561157418144conjugal transfer fertility inhibition protein FinO 
46APECO1_O1CoBM6252312..52524 [+], 213157418145hypothetical protein 
47APECO1_O1CoBM63 (srnB)53043..53354 [+], 312157418146hypothetical protein 
48APECO1_O1CoBM64 (repA2)53638..53895 [+], 258157418147replication protein 
49APECO1_O1CoBM65 (repA3)53912..54214 [-], 303157418148RepA3 
50APECO1_O1CoBM66 (repA)54182..54676 [+], 495157418149hypothetical protein 
51APECO1_O1CoBM67 (repA1)54669..55526 [+], 858229776983replication protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_009837

Genomics & Bioinformatics Group in MML, SJTU