Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU06_RS05460 Genome accession   NZ_CP155938
Coordinates   1294418..1295674 (-) Length   418 a.a.
NCBI ID   WP_075285409.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain Xcc-R1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289418..1300674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU06_RS05430 (ABFU06_05410) - 1289855..1290328 (+) 474 WP_012437597.1 hypothetical protein -
  ABFU06_RS05435 (ABFU06_05415) - 1290359..1291036 (+) 678 WP_003490678.1 response regulator transcription factor -
  ABFU06_RS05440 (ABFU06_05420) - 1291029..1292363 (+) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -
  ABFU06_RS05445 (ABFU06_05425) - 1292462..1292717 (-) 256 Protein_1058 SymE family type I addiction module toxin -
  ABFU06_RS05450 (ABFU06_05430) coaE 1292911..1293534 (-) 624 WP_225042504.1 dephospho-CoA kinase -
  ABFU06_RS05455 (ABFU06_05435) - 1293548..1294411 (-) 864 WP_011038216.1 A24 family peptidase -
  ABFU06_RS05460 (ABFU06_05440) pilC 1294418..1295674 (-) 1257 WP_075285409.1 type II secretion system F family protein Machinery gene
  ABFU06_RS05465 (ABFU06_05445) - 1296011..1296460 (+) 450 WP_228943907.1 pilin -
  ABFU06_RS05470 (ABFU06_05450) - 1296575..1296949 (+) 375 WP_269467167.1 pilin -
  ABFU06_RS05475 (ABFU06_05455) pilB 1297008..1298714 (+) 1707 WP_228943908.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45523.96 Da        Isoelectric Point: 10.3308

>NTDB_id=999929 ABFU06_RS05460 WP_075285409.1 1294418..1295674(-) (pilC) [Xanthomonas campestris pv. raphani strain Xcc-R1]
MAAVRGVVKTKPTLQLEQASPFVWQGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVSRHPVQFDELYRNLVKAGEGAGVLET
VLDTIATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEDVFKGFGAELPAFTQIIVNMSRFMVSWWWLI
LFVVVVAVIGFIFAYKRSPSMQHGMDRVILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYETA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=999929 ABFU06_RS05460 WP_075285409.1 1294418..1295674(-) (pilC) [Xanthomonas campestris pv. raphani strain Xcc-R1]
ATGGCAGCAGTACGTGGTGTGGTCAAGACGAAGCCGACCTTGCAATTAGAGCAGGCTAGTCCGTTTGTCTGGCAGGGAAC
AGACAAGCGCGGCGTGAAGATGAAGGGGGAGCAGACGGCAAAAAACGCCAATCTGCTACGTGCGGAACTCCGCAGGCAGG
GGATAACGCCTACTGTTGTAAAGGTAAAGCCGAAGCCGTTATTTGGCGCGGCTGGCAAAAAGGTTTCCGCTAAGGACATC
TCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCCGGAGTTCCGATCGTTGGGGCGCTTGAGATCATCGGCAGCGG
CCAGAAAAATCCGCGCATGCGGAACATGGTTGGGCAAATCCGCGCAGACATCGAAGGCGGTTCGTCACTGCATGAAGCAG
TCAGCAGGCACCCCGTGCAGTTTGACGAGCTCTACAGGAACCTCGTTAAAGCCGGCGAAGGTGCGGGTGTTTTGGAGACG
GTGCTGGACACCATTGCGACATACAAGGAGAACATCGAGGCGCTGAAGGGCAAGATCAAAAAAGCCTTGTTCTATCCGGC
AATGGTTGTCGCAGTAGCACTAATCGTCAGCGCGATTCTGCTCATCTTTGTGGTACCTCAATTTGAGGACGTGTTCAAGG
GCTTTGGCGCGGAACTGCCCGCCTTCACTCAGATCATTGTGAACATGTCGCGGTTCATGGTGTCGTGGTGGTGGCTGATT
CTTTTTGTTGTGGTCGTCGCCGTCATTGGCTTCATCTTCGCCTACAAACGCTCCCCCTCAATGCAACACGGCATGGACCG
GGTCATCCTCAAAGTGCCGATCATCGGCCAAATCATGCACAACAGTTCCATTGCACGTTTTGCACGGACGACTGCAGTGA
CATTCAAGGCAGGCGTACCATTGGTCGAAGCATTGAGCATCGTGGCTGGCGCAACCGGCAACTCGGTATACGAGACTGCC
GTACTACGGATGCGGGACGATGTGTCAGTGGGCTACCCTGTGAACATGGCAATGAAACAGGTCAACCTGTTTCCGCACAT
GGTGGTGCAGATGACCGCCATTGGTGAAGAGGCTGGCGCACTGGATGCCATGCTATTCAAGGTGGCGGAGTACTTCGAGC
AAGAGGTCAACAATGCGGTTGATGCGCTGAGCAGCCTGATCGAACCCCTCATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACTTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.513

95.215

0.5
  pilC Legionella pneumophila strain ERS1305867

51.478

97.129

0.5
  pilC Acinetobacter baylyi ADP1

50.882

94.976

0.483
  pilC Acinetobacter baumannii D1279779

50.378

94.976

0.478
  pilG Neisseria gonorrhoeae MS11

43.467

95.215

0.414
  pilG Neisseria meningitidis 44/76-A

42.965

95.215

0.409
  pilC Vibrio cholerae strain A1552

41.363

98.325

0.407
  pilC Vibrio campbellii strain DS40M4

40.399

95.933

0.388

Multiple sequence alignment