Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EL079_RS05890 Genome accession   NZ_LR134283
Coordinates   1208902..1209948 (-) Length   348 a.a.
NCBI ID   WP_004225005.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1203902..1214948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS05865 (NCTC10713_01217) nusA 1204133..1205326 (-) 1194 WP_004344529.1 transcription termination factor NusA -
  EL079_RS05870 (NCTC10713_01218) rimP 1205377..1205865 (-) 489 WP_004224979.1 ribosome maturation factor RimP -
  EL079_RS05875 (NCTC10713_01219) - 1206116..1206805 (-) 690 WP_026248194.1 VIT family protein -
  EL079_RS05880 (NCTC10713_01220) trmB 1207422..1208057 (-) 636 WP_003033795.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL079_RS05885 (NCTC10713_01221) ccrZ 1208054..1208851 (-) 798 WP_003043230.1 cell cycle regulator CcrZ -
  EL079_RS05890 (NCTC10713_01222) pptB 1208902..1209948 (-) 1047 WP_004225005.1 ABC transporter permease Regulator
  EL079_RS05895 (NCTC10713_01223) pptA 1209945..1210676 (-) 732 WP_004344524.1 ABC transporter ATP-binding protein Regulator
  EL079_RS05900 (NCTC10713_01224) - 1210745..1211155 (+) 411 WP_004344535.1 HIT family protein -
  EL079_RS05905 (NCTC10713_01225) - 1211165..1211452 (+) 288 WP_004224964.1 hypothetical protein -
  EL079_RS05910 (NCTC10713_01226) brpA 1211499..1212614 (-) 1116 WP_004224985.1 biofilm formation/cell division transcriptional regulator BrpA -
  EL079_RS05915 (NCTC10713_01227) - 1212621..1213142 (-) 522 WP_003033089.1 GNAT family N-acetyltransferase -
  EL079_RS05920 (NCTC10713_01228) tsaE 1213135..1213575 (-) 441 WP_004344533.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40764.97 Da        Isoelectric Point: 10.3231

>NTDB_id=999926 EL079_RS05890 WP_004225005.1 1208902..1209948(-) (pptB) [Streptococcus anginosus strain NCTC10713]
MRDLFQKRKQVFRNQCLKYSRYVFNDHFVLFLLVFTGFLAVQYSQLLRNLPSNHLPIILALAVLLILLLPLGRIATYMEK
PDSLFLLVKEEELNSYLQEQMRSSYRLWALLQTVALLLLAPLLLALGMPLWGWFILVFLMLLAKWFIFLQKSQKFYQGAG
VNWGYLIAYEERRKQTILRFFALFTNVKGISNSVKRRAYLDGLTNILPKRQSTTWQNMYLRSYLRNGDFLALTIRLLFLS
LLGIGFISQSWIAAIFVALLNYLLLFQLTALYHAFDYQYLTFLFPLEINSKLKGVKQVIALIGYSVLFVETMMALLFFQD
RVALLFMIGITLLLYVIYLPFKLRSLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=999926 EL079_RS05890 WP_004225005.1 1208902..1209948(-) (pptB) [Streptococcus anginosus strain NCTC10713]
ATGAGAGATCTGTTTCAAAAGCGCAAACAAGTATTTCGCAATCAATGTTTGAAGTATTCGCGCTATGTTTTTAACGACCA
TTTTGTCCTCTTTTTATTAGTTTTTACTGGCTTTTTAGCTGTTCAATACAGTCAGTTGTTGCGAAATTTACCTTCAAATC
ACCTGCCAATCATTCTTGCTTTAGCAGTTCTTTTGATTTTATTGTTGCCTCTGGGACGAATCGCAACATATATGGAAAAA
CCAGATAGTCTATTTTTATTGGTCAAAGAAGAGGAACTAAACAGCTACTTACAAGAACAAATGCGTTCATCTTATCGATT
ATGGGCCTTGCTTCAAACCGTTGCGTTGTTACTATTAGCACCGCTTCTTCTTGCTTTAGGCATGCCGCTTTGGGGCTGGT
TTATTCTTGTTTTTCTTATGTTGCTAGCAAAATGGTTTATCTTTTTGCAAAAAAGCCAGAAATTTTACCAAGGTGCAGGG
GTGAATTGGGGCTATCTCATTGCTTACGAAGAAAGACGAAAACAGACGATTCTGCGTTTCTTTGCTCTCTTTACCAATGT
TAAGGGAATTTCCAATAGCGTAAAACGCCGAGCATATCTTGATGGTTTGACGAATATTCTACCAAAAAGACAGTCAACTA
CTTGGCAAAATATGTATTTGCGTTCTTATTTGCGCAATGGTGATTTTCTTGCCTTGACTATACGGTTGCTGTTTCTGTCT
CTTTTGGGAATTGGTTTTATCAGTCAATCGTGGATTGCTGCCATATTTGTGGCATTGTTAAATTATCTCCTGCTATTTCA
GTTGACAGCCTTGTACCATGCCTTTGATTACCAATATTTGACGTTCTTATTCCCTTTAGAAATCAACTCAAAGTTAAAAG
GAGTGAAACAAGTGATTGCTCTTATTGGCTACAGCGTGCTTTTTGTGGAAACAATGATGGCTTTGCTGTTTTTCCAAGAT
AGAGTAGCTTTGCTTTTTATGATAGGAATCACATTGCTACTCTATGTCATTTATTTACCATTCAAATTAAGAAGTTTGGT
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.839

100

0.468

  pptB Streptococcus salivarius strain HSISS4

46.264

100

0.463