Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EL079_RS04425 Genome accession   NZ_LR134283
Coordinates   901738..905010 (-) Length   1090 a.a.
NCBI ID   WP_003030982.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 896738..910010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS04420 (NCTC10713_00926) rexA 898061..901741 (-) 3681 WP_003030984.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL079_RS04425 (NCTC10713_00927) rexB 901738..905010 (-) 3273 WP_003030982.1 ATP-dependent nuclease subunit B Machinery gene
  EL079_RS04430 (NCTC10713_00928) - 905131..906345 (-) 1215 WP_003030981.1 ABC transporter permease -
  EL079_RS04435 (NCTC10713_00929) - 906342..907235 (-) 894 WP_003030980.1 ABC transporter ATP-binding protein -
  EL079_RS04440 (NCTC10713_00930) - 907436..907648 (-) 213 WP_003025304.1 YdbC family protein -
  EL079_RS04445 (NCTC10713_00931) - 907736..908077 (+) 342 WP_025271884.1 hypothetical protein -
  EL079_RS04450 (NCTC10713_00932) - 908093..908851 (-) 759 WP_003031905.1 ABC transporter ATP-binding protein -
  EL079_RS04455 (NCTC10713_00933) - 908848..909714 (-) 867 WP_003031834.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125414.48 Da        Isoelectric Point: 5.3668

>NTDB_id=999904 EL079_RS04425 WP_003030982.1 901738..905010(-) (rexB) [Streptococcus anginosus strain NCTC10713]
MKLLYTDIRNPLTKILVKEAERLAQAGKRVFYIAPNSLSFEKERAVLSLLENHASFAITVTRFAQMARYFVLNNVQQGRP
LDDIGLGMLFYKVLSEMDEHDLRVYGGIRTDAQFIQQLVELYHELQAAQMTFSDLDYLDEDEKKADLIKILQLVMYQLNQ
SEFISESNIMVFANHITAGDVDKELQGLALVIDGFTRFSAEEAYLIELLHSKGVEIIIGVYASEKAYRATFREGNLYQAS
VDFLRHLANEYEVKPEYRPAKQPDDAFGNISKLLESRYDFSDVELELTEQDRSHVQIWSTVNQKEELEYVAKSIRQRVHD
GARYKDIRLLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLKQE
ELDLFEQYIRFADVRGMSKFSKEFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHQFLTTTSLSQNFA
GLVDSTNPQDQERQEEVWKAFCHVLEQFASVFSTSKVKLDDFLTLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAVGLTQDCFPKIVQNKSLLSDEERLRLNEATDAHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNI
SPYLLELHEQPIGLPIEVKRPQATSDDIGTYRALLARIIELNQGDIDRERSLTEKEQTFWSVAVRVLRKKLESEGISIPN
VTSKLETETLSTQTLQALYPPHQAFQLSTSALTEFYRNQYAYFLKYVLALQEEMTIHPDVRSHGNFLHRVFEKVMQDSSS
EPFDNRLEKAIQEASQEAEFEALYTENAEALFAHEVLLDTARATGRVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQ
IRGKVDRIDRLKIDGSLGVVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQESWMNEEVHAFGAMYLQMTNPLVPLAKTK
SRGDAVKEAMKNLEYKGLFLFEQARQLNGLYDKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFYINPYTENGKSIA
PFVEQYKSITGFEANLHLSSARHLVKLDSHPTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=999904 EL079_RS04425 WP_003030982.1 901738..905010(-) (rexB) [Streptococcus anginosus strain NCTC10713]
ATGAAATTACTTTATACTGATATTCGCAATCCCTTAACGAAGATTTTGGTAAAAGAAGCAGAGCGCTTGGCACAGGCAGG
CAAGCGCGTGTTTTATATTGCCCCTAACTCTCTTTCATTTGAAAAGGAGAGGGCTGTTTTGAGTCTTTTAGAAAACCACG
CTTCGTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCGCGTTATTTTGTCCTCAATAATGTGCAGCAAGGCAGACCA
TTAGACGATATTGGTTTGGGAATGCTGTTTTACAAAGTCTTATCAGAAATGGATGAGCACGATTTGCGGGTGTACGGTGG
CATTCGGACGGATGCGCAATTTATTCAGCAATTGGTTGAGCTTTATCATGAATTGCAAGCTGCTCAGATGACCTTTTCGG
ATTTGGACTATCTAGATGAGGATGAGAAAAAAGCAGATTTGATCAAGATTTTACAGCTAGTGATGTATCAGCTTAATCAG
AGTGAATTTATTTCTGAGTCAAATATTATGGTCTTTGCCAATCATATTACAGCAGGTGATGTAGATAAAGAATTGCAAGG
ATTGGCTTTGGTCATTGACGGTTTTACACGTTTTTCAGCTGAAGAAGCTTATTTGATCGAGCTTTTGCATAGCAAGGGTG
TGGAAATCATTATTGGTGTTTATGCCAGTGAGAAGGCATACCGTGCGACTTTTCGAGAGGGTAATCTGTATCAGGCTAGC
GTGGATTTCTTGCGCCATTTGGCAAATGAGTATGAAGTGAAACCTGAATATAGACCTGCAAAGCAGCCAGATGATGCTTT
TGGAAACATTTCAAAACTGCTAGAAAGCCGCTATGATTTCTCAGATGTTGAGCTGGAGCTGACGGAGCAAGACCGTTCGC
ATGTACAGATTTGGTCGACTGTCAATCAAAAAGAAGAACTGGAATATGTGGCGAAAAGCATTCGCCAGCGAGTTCATGAT
GGTGCTCGCTACAAAGATATTCGCTTACTTTTGGGAGATGTGGAAGCCTATCGTTTGCAGTTAAAGACGATTTTTGATCA
GTATCAGATTCCTTTTTATTTGGGGCGAAGCGAGTCCATGGCACATCACCCTTTGGTGCAGTTTATTGAAGCGTTAGTGC
GTTTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTGTTTGAGCAATATATCCGTTTTGCAGACGTGAGAGGAATGAGTAAGTTTTCTAAAGAATTTACTCACAA
TCAGCATCAAAAATTTGACCTGATTCACATCAATCAATTAAGAAAAAAAATAGTCACTCCGCTTTTGGAATTTTTCAAAT
CTCGTAGTCAAACTGCGACAGGTTTGCTTCAAAAATTTCATCAATTTTTAACGACAACTTCTCTTTCTCAGAATTTTGCT
GGTTTAGTAGATTCTACGAATCCGCAAGATCAGGAAAGACAAGAAGAAGTCTGGAAGGCTTTTTGTCATGTTTTGGAACA
ATTTGCCAGTGTCTTTTCAACCAGCAAGGTCAAGCTAGATGATTTTCTGACTCTGGTGCAGTCAGGAATGCTGTTATCCA
ACTATCGGACTATTCCAGCAACAGTGGACGTTGTGACCGTTCAATCTTATGATTTGATTGAGCCCTTGTCAAGTCCTTTT
GTCTATGCTGTTGGTTTGACCCAAGACTGTTTTCCAAAAATTGTGCAAAACAAGAGTCTCTTGTCAGATGAAGAACGATT
ACGATTAAATGAAGCGACTGATGCGCATTCGGAATTGCTGATTGCTGCTCAGGAAAATCTCCAGAAAAATCGTTTTGTCG
CTTTGTCGCTTCTGAATGCTGCAACAGAGAGGTTGGTGCTTTCTACTCCTCAGATTGTCAATGAAATAGAGAACAACATT
TCTCCATATTTGTTAGAATTGCATGAACAACCAATTGGGCTGCCGATTGAAGTGAAGCGTCCGCAGGCAACAAGTGATGA
TATTGGTACTTATCGTGCTTTGTTGGCGAGAATTATTGAGTTGAATCAAGGGGATATTGATCGAGAGCGCTCTTTGACGG
AGAAAGAGCAGACTTTTTGGTCAGTTGCTGTGCGGGTTCTGCGCAAAAAATTGGAAAGTGAAGGCATTTCGATTCCTAAT
GTAACGTCAAAACTTGAAACAGAAACCTTGTCAACGCAGACATTGCAAGCTCTTTATCCGCCTCATCAAGCATTTCAGCT
ATCTACTTCAGCTTTGACAGAATTCTACCGCAATCAATATGCTTATTTTTTGAAGTATGTCTTGGCTTTGCAGGAAGAAA
TGACGATTCACCCAGATGTGCGCAGTCATGGAAATTTCCTGCATCGTGTGTTTGAAAAAGTCATGCAAGATTCGTCAAGT
GAGCCATTTGATAATCGTCTAGAAAAAGCCATTCAAGAAGCGAGTCAGGAAGCGGAATTTGAAGCTCTTTATACAGAAAA
TGCAGAAGCTTTGTTTGCTCACGAAGTTTTGCTGGACACCGCGCGTGCGACAGGGCGTGTTCTAGAAAGAAATGATTTAG
TAGAAACCATTCAAGAAGAAGCTGTTTTCGGTCAAGAAGAAACAAATGTTCTAACCTTGTCAGACGGACGCAACCTTCAA
ATTCGAGGGAAAGTTGACCGCATTGACCGTTTGAAGATAGATGGCAGTCTAGGCGTTGTTGACTATAAATCAAGCGATAC
GAATTTTGATTTTCAGAAATTTTTCAATGGCTTAAATTCTCAATTACCTACCTATCTAGCAGCTTTGAAACAAGAGTCGT
GGATGAATGAAGAAGTGCATGCTTTTGGTGCTATGTATCTGCAGATGACCAATCCACTTGTGCCTTTAGCAAAGACGAAG
TCGCGAGGCGACGCTGTCAAAGAAGCAATGAAGAACCTAGAATACAAAGGTCTGTTCTTGTTTGAGCAGGCTCGTCAGCT
GAATGGTTTGTATGATAAAAAGAAAGTGAATCTGTTGAGTCAAGAGGAATTGGAGACATTGTTGGCTTATAATGCACTCT
TGTATCGCCGTGCTGCTGAGCAGATTTTGGCAGGGCATTTTTACATCAATCCTTATACGGAGAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCCATTACGGGATTTGAAGCGAACCTTCACCTCTCTAGCGCCCGCCATTTGGTTAAGTT
AGATAGTCACCCGACAGGTGAAAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGCTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.909

100

0.564