Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABFU26_RS15305 Genome accession   NZ_CP155935
Coordinates   3475411..3475812 (-) Length   133 a.a.
NCBI ID   WP_011038048.1    Uniprot ID   Q8P6P2
Organism   Xanthomonas campestris pv. raphani strain Xcr-TH1B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470411..3480812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU26_RS15290 (ABFU26_15245) - 3472425..3474461 (-) 2037 WP_011038045.1 methyl-accepting chemotaxis protein -
  ABFU26_RS15295 (ABFU26_15250) - 3474501..3475031 (-) 531 WP_407460353.1 chemotaxis protein CheW -
  ABFU26_RS15300 (ABFU26_15255) - 3475031..3475393 (-) 363 WP_011038047.1 PleD family two-component system response regulator -
  ABFU26_RS15305 (ABFU26_15260) pilG 3475411..3475812 (-) 402 WP_011038048.1 twitching motility response regulator PilG Regulator
  ABFU26_RS15310 (ABFU26_15265) gshB 3476050..3477000 (+) 951 WP_014508571.1 glutathione synthase -
  ABFU26_RS15315 (ABFU26_15270) - 3476997..3477872 (+) 876 WP_014508572.1 energy transducer TonB -
  ABFU26_RS15320 (ABFU26_15275) - 3478076..3478999 (-) 924 WP_274341756.1 ADP-ribosylglycohydrolase family protein -
  ABFU26_RS15325 (ABFU26_15280) tsaB 3478999..3479718 (-) 720 WP_014508577.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14676.05 Da        Isoelectric Point: 6.3482

>NTDB_id=999903 ABFU26_RS15305 WP_011038048.1 3475411..3475812(-) (pilG) [Xanthomonas campestris pv. raphani strain Xcr-TH1B]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=999903 ABFU26_RS15305 WP_011038048.1 3475411..3475812(-) (pilG) [Xanthomonas campestris pv. raphani strain Xcr-TH1B]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTTATCGATGATTCGAAGACCATTCGCCG
CACTGCCGAAACGCTGCTCAAGCGCGAAGGCTGTGAAGTGGTGACAGCGACGGACGGATTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCTTCCAAGGATGGCCTGTTTGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGTACGTACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P6P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment