Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABEG41_RS16295 Genome accession   NZ_CP155795
Coordinates   3121291..3121935 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain D137     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116291..3126935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS16260 (ABEG41_16260) mrpB 3117481..3117912 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ABEG41_RS16265 (ABEG41_16265) mrpC 3117912..3118253 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ABEG41_RS16270 (ABEG41_16270) mrpD 3118246..3119727 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  ABEG41_RS16275 (ABEG41_16275) mrpE 3119733..3120209 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  ABEG41_RS16280 (ABEG41_16280) mrpF 3120209..3120493 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ABEG41_RS16285 (ABEG41_16285) mnhG 3120477..3120851 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ABEG41_RS16290 (ABEG41_16290) yuxO 3120892..3121272 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ABEG41_RS16295 (ABEG41_16295) comA 3121291..3121935 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ABEG41_RS16300 (ABEG41_16300) - 3122016..3124329 (-) 2314 Protein_3144 histidine kinase -
  ABEG41_RS16305 (ABEG41_16305) comX 3124345..3124566 (-) 222 WP_014114983.1 competence pheromone ComX -
  ABEG41_RS16310 (ABEG41_16310) - 3124563..3125432 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  ABEG41_RS16315 (ABEG41_16315) degQ 3125617..3125757 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ABEG41_RS16320 (ABEG41_16320) - 3125979..3126104 (+) 126 WP_141770195.1 hypothetical protein -
  ABEG41_RS16325 (ABEG41_16325) - 3126219..3126587 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=999414 ABEG41_RS16295 WP_003220716.1 3121291..3121935(-) (comA) [Bacillus subtilis strain D137]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=999414 ABEG41_RS16295 WP_003220716.1 3121291..3121935(-) (comA) [Bacillus subtilis strain D137]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCGTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment