Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   M036_RS02870 Genome accession   NZ_CP005997
Coordinates   552011..552652 (+) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis TO-A     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 547011..557652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M036_RS02845 (M036_02810) ydfE 548200..548823 (-) 624 WP_029317354.1 flavin reductase family protein -
  M036_RS02850 (M036_02815) ydfF 548913..549593 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  M036_RS02855 (M036_02820) ydfG 549673..550116 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  M036_RS21145 (M036_02825) - 550202..550381 (-) 180 WP_010886421.1 hypothetical protein -
  M036_RS02860 (M036_02830) - 550378..550527 (-) 150 WP_003234189.1 hypothetical protein -
  M036_RS02865 (M036_02835) ydfH 550795..552018 (+) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  M036_RS02870 (M036_02840) vraR 552011..552652 (+) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  M036_RS02875 (M036_02845) pleJ 552768..554942 (+) 2175 WP_003243548.1 MMPL family transporter -
  M036_RS02880 (M036_02850) cesA 555354..556256 (-) 903 WP_003234180.1 carboxylesterase -
  M036_RS02885 (M036_02855) ydfK 556459..557106 (-) 648 WP_003234178.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=99891 M036_RS02870 WP_003234184.1 552011..552652(+) (vraR) [Bacillus subtilis TO-A]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=99891 M036_RS02870 WP_003234184.1 552011..552652(+) (vraR) [Bacillus subtilis TO-A]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment