Detailed information NTG0998908

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EL131_RS17145
• Genome accession: NZ_LR134234
• Coordinates: 3462194..3463219 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain NCTC8623
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3457194..3468219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL131_RS17115 (NCTC8623_03422)	zapB	3457278..3457523 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
EL131_RS17120 (NCTC8623_03423)	rraA	3457608..3458093 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
EL131_RS17125 (NCTC8623_03424)	menA	3458186..3459112 (-)	927	WP_001307494.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EL131_RS17130 (NCTC8623_03425)	hslU	3459179..3460510 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
EL131_RS17135 (NCTC8623_03426)	hslV	3460520..3461050 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
EL131_RS17140 (NCTC8623_03427)	ftsN	3461143..3462102 (-)	960	WP_000068834.1	cell division protein FtsN	-
EL131_RS17145 (NCTC8623_03428)	cytR	3462194..3463219 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
EL131_RS17150 (NCTC8623_03429)	priA	3463375..3465573 (-)	2199	WP_001298972.1	primosomal protein N'	Machinery gene
EL131_RS17155 (NCTC8623_03430)	rpmE	3465776..3465988 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=998908 EL131_RS17145 WP_000644904.1 3462194..3463219(-) (cytR) [Escherichia coli strain NCTC8623]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=998908 EL131_RS17145 WP_000644904.1 3462194..3463219(-) (cytR) [Escherichia coli strain NCTC8623]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628