Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABDZ21_RS09235 | Genome accession | NZ_CP155721 |
| Coordinates | 1886674..1887054 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 2024CK-00246 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1881674..1892054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABDZ21_RS09205 (ABDZ21_09205) | kdsB | 1882577..1883338 (+) | 762 | WP_000680694.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABDZ21_RS09210 (ABDZ21_09210) | - | 1883350..1884330 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABDZ21_RS09215 (ABDZ21_09215) | - | 1884342..1884683 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABDZ21_RS09220 (ABDZ21_09220) | - | 1884701..1885474 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABDZ21_RS09225 (ABDZ21_09225) | - | 1885512..1886120 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABDZ21_RS09230 (ABDZ21_09230) | - | 1886130..1886684 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABDZ21_RS09235 (ABDZ21_09235) | xcpV | 1886674..1887054 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABDZ21_RS09240 (ABDZ21_09240) | xcpW | 1887054..1887755 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABDZ21_RS09245 (ABDZ21_09245) | gspK | 1887755..1888714 (+) | 960 | WP_000301463.1 | type II secretion system minor pseudopilin GspK | - |
| ABDZ21_RS09250 (ABDZ21_09250) | - | 1888944..1889540 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABDZ21_RS09255 (ABDZ21_09255) | ung | 1889591..1890304 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABDZ21_RS09260 (ABDZ21_09260) | - | 1890301..1891425 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABDZ21_RS09265 (ABDZ21_09265) | tadA | 1891432..1891935 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=998707 ABDZ21_RS09235 WP_000836911.1 1886674..1887054(+) (xcpV) [Acinetobacter baumannii strain 2024CK-00246]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=998707 ABDZ21_RS09235 WP_000836911.1 1886674..1887054(+) (xcpV) [Acinetobacter baumannii strain 2024CK-00246]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |