Detailed information NTG0998708

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABDZ21_RS09240
• Genome accession: NZ_CP155721
• Coordinates: 1887054..1887755 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2024CK-00246
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1882054..1892755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDZ21_RS09205 (ABDZ21_09205)	kdsB	1882577..1883338 (+)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABDZ21_RS09210 (ABDZ21_09210)	-	1883350..1884330 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
ABDZ21_RS09215 (ABDZ21_09215)	-	1884342..1884683 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
ABDZ21_RS09220 (ABDZ21_09220)	-	1884701..1885474 (+)	774	WP_000497298.1	TatD family hydrolase	-
ABDZ21_RS09225 (ABDZ21_09225)	-	1885512..1886120 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
ABDZ21_RS09230 (ABDZ21_09230)	-	1886130..1886684 (+)	555	WP_000841373.1	type II secretion system protein	-
ABDZ21_RS09235 (ABDZ21_09235)	xcpV	1886674..1887054 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABDZ21_RS09240 (ABDZ21_09240)	xcpW	1887054..1887755 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABDZ21_RS09245 (ABDZ21_09245)	gspK	1887755..1888714 (+)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
ABDZ21_RS09250 (ABDZ21_09250)	-	1888944..1889540 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
ABDZ21_RS09255 (ABDZ21_09255)	ung	1889591..1890304 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
ABDZ21_RS09260 (ABDZ21_09260)	-	1890301..1891425 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
ABDZ21_RS09265 (ABDZ21_09265)	tadA	1891432..1891935 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
ABDZ21_RS09270 (ABDZ21_09270)	-	1892005..1892448 (+)	444	WP_001246676.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=998708 ABDZ21_RS09240 WP_000594572.1 1887054..1887755(+) (xcpW) [Acinetobacter baumannii strain 2024CK-00246]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=998708 ABDZ21_RS09240 WP_000594572.1 1887054..1887755(+) (xcpW) [Acinetobacter baumannii strain 2024CK-00246]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991