Detailed information NTG0998661

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDC58_RS04210
• Genome accession: NZ_CP155717
• Coordinates: 669573..670373 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 578
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 664573..675373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDC58_RS04190 (ABDC58_04190)	dksA	665153..665608 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABDC58_RS04195 (ABDC58_04195)	sfsA	665771..666487 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDC58_RS04200 (ABDC58_04200)	thpR	666487..667023 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDC58_RS04205 (ABDC58_04205)	hrpB	667096..669525 (+)	2430	WP_117063990.1	ATP-dependent helicase HrpB	-
ABDC58_RS04210 (ABDC58_04210)	pilD	669573..670373 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABDC58_RS04215 (ABDC58_04215)	-	670370..671116 (-)	747	WP_004145897.1	type II secretion system protein N	-
ABDC58_RS04220 (ABDC58_04220)	-	671106..671591 (-)	486	WP_274920231.1	type II secretion system protein M	-
ABDC58_RS04225 (ABDC58_04225)	gspL	671584..672777 (-)	1194	WP_274920232.1	type II secretion system protein GspL	-
ABDC58_RS04230 (ABDC58_04230)	gspK	672764..673750 (-)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
ABDC58_RS04235 (ABDC58_04235)	gspJ	673747..674343 (-)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ABDC58_RS04240 (ABDC58_04240)	gspI	674340..674705 (-)	366	WP_274885867.1	type II secretion system minor pseudopilin GspI	-
ABDC58_RS04245 (ABDC58_04245)	gspH	674708..675217 (-)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998661 ABDC58_RS04210 WP_004145898.1 669573..670373(-) (pilD) [Klebsiella pneumoniae strain 578]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998661 ABDC58_RS04210 WP_004145898.1 669573..670373(-) (pilD) [Klebsiella pneumoniae strain 578]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425