Detailed information NTG0998656

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDC16_RS18285
• Genome accession: NZ_CP155714
• Coordinates: 3614910..3615710 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain B-KP1118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3609910..3620710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDC16_RS18265 (ABDC16_18265)	dksA	3610490..3610945 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABDC16_RS18270 (ABDC16_18270)	sfsA	3611108..3611824 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDC16_RS18275 (ABDC16_18275)	thpR	3611824..3612360 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDC16_RS18280 (ABDC16_18280)	hrpB	3612433..3614862 (+)	2430	WP_065808762.1	ATP-dependent helicase HrpB	-
ABDC16_RS18285 (ABDC16_18285)	pilD	3614910..3615710 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
ABDC16_RS18290 (ABDC16_18290)	-	3615707..3616453 (-)	747	WP_004145897.1	type II secretion system protein N	-
ABDC16_RS18295 (ABDC16_18295)	-	3616443..3616928 (-)	486	WP_023312675.1	type II secretion system protein M	-
ABDC16_RS18300 (ABDC16_18300)	gspL	3616921..3618114 (-)	1194	WP_019704440.1	type II secretion system protein GspL	-
ABDC16_RS18305 (ABDC16_18305)	gspK	3618101..3619087 (-)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
ABDC16_RS18310 (ABDC16_18310)	gspJ	3619084..3619680 (-)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ABDC16_RS18315 (ABDC16_18315)	gspI	3619677..3620042 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDC16_RS18320 (ABDC16_18320)	gspH	3620039..3620554 (-)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=998656 ABDC16_RS18285 WP_002888947.1 3614910..3615710(-) (pilD) [Klebsiella pneumoniae strain B-KP1118]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998656 ABDC16_RS18285 WP_002888947.1 3614910..3615710(-) (pilD) [Klebsiella pneumoniae strain B-KP1118]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425