Detailed information NTG0998629

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDC12_RS20800
• Genome accession: NZ_CP155711
• Coordinates: 4243902..4244702 (+)
• Length: 266 a.a.
• NCBI ID: WP_049116597.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain 397
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4238902..4249702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDC12_RS20765 (ABDC12_20765)	gspH	4239055..4239570 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
ABDC12_RS20770 (ABDC12_20770)	gspI	4239567..4239932 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
ABDC12_RS20775 (ABDC12_20775)	gspJ	4239929..4240525 (+)	597	WP_049116590.1	type II secretion system minor pseudopilin GspJ	-
ABDC12_RS20780 (ABDC12_20780)	gspK	4240522..4241502 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
ABDC12_RS20785 (ABDC12_20785)	gspL	4241495..4242691 (+)	1197	WP_049116592.1	type II secretion system protein GspL	-
ABDC12_RS20790 (ABDC12_20790)	-	4242684..4243169 (+)	486	WP_049116594.1	type II secretion system protein M	-
ABDC12_RS20795 (ABDC12_20795)	-	4243159..4243887 (+)	729	WP_049116595.1	type II secretion system protein N	-
ABDC12_RS20800 (ABDC12_20800)	pilD	4243902..4244702 (+)	801	WP_049116597.1	A24 family peptidase	Machinery gene
ABDC12_RS20805 (ABDC12_20805)	hrpB	4244750..4247179 (-)	2430	WP_049116600.1	ATP-dependent helicase HrpB	-
ABDC12_RS20810 (ABDC12_20810)	thpR	4247252..4247788 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDC12_RS20815 (ABDC12_20815)	sfsA	4247788..4248504 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
ABDC12_RS20820 (ABDC12_20820)	dksA	4248667..4249122 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=998629 ABDC12_RS20800 WP_049116597.1 4243902..4244702(+) (pilD) [Klebsiella quasipneumoniae strain 397]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998629 ABDC12_RS20800 WP_049116597.1 4243902..4244702(+) (pilD) [Klebsiella quasipneumoniae strain 397]
ATGACGACATTAGCCGCTTTATCGCTGCATTTCCCCCTTGTCTGGTATGGTTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGATGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCGCCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425