Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABDC11_RS20355 | Genome accession | NZ_CP155707 |
| Coordinates | 4140610..4141410 (+) | Length | 266 a.a. |
| NCBI ID | WP_021441214.1 | Uniprot ID | A0A4V0HF22 |
| Organism | Klebsiella pneumoniae strain 298 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4135610..4146410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABDC11_RS20320 (ABDC11_20320) | gspH | 4135766..4136281 (+) | 516 | WP_023282194.1 | type II secretion system minor pseudopilin GspH | - |
| ABDC11_RS20325 (ABDC11_20325) | gspI | 4136278..4136643 (+) | 366 | WP_023282193.1 | type II secretion system minor pseudopilin GspI | - |
| ABDC11_RS20330 (ABDC11_20330) | gspJ | 4136640..4137236 (+) | 597 | WP_004145893.1 | type II secretion system minor pseudopilin GspJ | - |
| ABDC11_RS20335 (ABDC11_20335) | gspK | 4137233..4138219 (+) | 987 | WP_117093830.1 | type II secretion system minor pseudopilin GspK | - |
| ABDC11_RS20340 (ABDC11_20340) | gspL | 4138206..4139399 (+) | 1194 | WP_032418425.1 | type II secretion system protein GspL | - |
| ABDC11_RS20345 (ABDC11_20345) | - | 4139392..4139877 (+) | 486 | WP_023282190.1 | type II secretion system protein M | - |
| ABDC11_RS20350 (ABDC11_20350) | - | 4139867..4140613 (+) | 747 | WP_023282189.1 | type II secretion system protein N | - |
| ABDC11_RS20355 (ABDC11_20355) | pilD | 4140610..4141410 (+) | 801 | WP_021441214.1 | A24 family peptidase | Machinery gene |
| ABDC11_RS20360 (ABDC11_20360) | hrpB | 4141458..4143887 (-) | 2430 | WP_023282188.1 | ATP-dependent helicase HrpB | - |
| ABDC11_RS20365 (ABDC11_20365) | thpR | 4143960..4144496 (+) | 537 | WP_004145901.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| ABDC11_RS20370 (ABDC11_20370) | sfsA | 4144496..4145212 (+) | 717 | WP_002888848.1 | DNA/RNA nuclease SfsA | - |
| ABDC11_RS20375 (ABDC11_20375) | dksA | 4145375..4145830 (+) | 456 | WP_002888845.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29419.04 Da Isoelectric Point: 8.8894
>NTDB_id=998605 ABDC11_RS20355 WP_021441214.1 4140610..4141410(+) (pilD) [Klebsiella pneumoniae strain 298]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=998605 ABDC11_RS20355 WP_021441214.1 4140610..4141410(+) (pilD) [Klebsiella pneumoniae strain 298]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.182 |
100 |
0.477 |
| pilD | Acinetobacter nosocomialis M2 |
46.008 |
98.872 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
45.247 |
98.872 |
0.447 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |