Detailed information NTG0998581

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDC08_RS21295
• Genome accession: NZ_CP155705
• Coordinates: 4326271..4327071 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain 1254-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4321271..4332071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDC08_RS21260 (ABDC08_21260)	gspH	4321427..4321936 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
ABDC08_RS21265 (ABDC08_21265)	gspI	4321939..4322304 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDC08_RS21270 (ABDC08_21270)	gspJ	4322301..4322897 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ABDC08_RS21275 (ABDC08_21275)	gspK	4322894..4323880 (+)	987	WP_087759970.1	type II secretion system minor pseudopilin GspK	-
ABDC08_RS21280 (ABDC08_21280)	gspL	4323867..4325060 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ABDC08_RS21285 (ABDC08_21285)	-	4325053..4325538 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABDC08_RS21290 (ABDC08_21290)	-	4325528..4326274 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABDC08_RS21295 (ABDC08_21295)	pilD	4326271..4327071 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
ABDC08_RS21300 (ABDC08_21300)	hrpB	4327119..4329548 (-)	2430	WP_085803167.1	ATP-dependent helicase HrpB	-
ABDC08_RS21305 (ABDC08_21305)	thpR	4329621..4330157 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDC08_RS21310 (ABDC08_21310)	sfsA	4330157..4330873 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDC08_RS21315 (ABDC08_21315)	dksA	4331036..4331491 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=998581 ABDC08_RS21295 WP_004191960.1 4326271..4327071(+) (pilD) [Klebsiella pneumoniae strain 1254-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=998581 ABDC08_RS21295 WP_004191960.1 4326271..4327071(+) (pilD) [Klebsiella pneumoniae strain 1254-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCAGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421