Detailed information NTG0998541

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDC07_RS03355
• Genome accession: NZ_CP155703
• Coordinates: 718888..719688 (-)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 733
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 713888..724688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDC07_RS03335 (ABDC07_03335)	dksA	714468..714923 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABDC07_RS03340 (ABDC07_03340)	sfsA	715086..715802 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDC07_RS03345 (ABDC07_03345)	thpR	715802..716338 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDC07_RS03350 (ABDC07_03350)	hrpB	716411..718840 (+)	2430	WP_004213442.1	ATP-dependent helicase HrpB	-
ABDC07_RS03355 (ABDC07_03355)	pilD	718888..719688 (-)	801	WP_004213441.1	A24 family peptidase	Machinery gene
ABDC07_RS03360 (ABDC07_03360)	-	719685..720431 (-)	747	WP_004145897.1	type II secretion system protein N	-
ABDC07_RS03365 (ABDC07_03365)	-	720421..720906 (-)	486	WP_004151943.1	type II secretion system protein M	-
ABDC07_RS03370 (ABDC07_03370)	gspL	720899..722092 (-)	1194	WP_004213440.1	type II secretion system protein GspL	-
ABDC07_RS03375 (ABDC07_03375)	gspK	722079..723065 (-)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
ABDC07_RS03380 (ABDC07_03380)	gspJ	723062..723658 (-)	597	WP_022615423.1	type II secretion system minor pseudopilin GspJ	-
ABDC07_RS03385 (ABDC07_03385)	gspI	723655..724020 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDC07_RS03390 (ABDC07_03390)	gspH	724017..724532 (-)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998541 ABDC07_RS03355 WP_004213441.1 718888..719688(-) (pilD) [Klebsiella pneumoniae strain 733]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998541 ABDC07_RS03355 WP_004213441.1 718888..719688(-) (pilD) [Klebsiella pneumoniae strain 733]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425