Detailed information NTG0998533

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDC06_RS19970
• Genome accession: NZ_CP155700
• Coordinates: 4100590..4101390 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SC-KP443
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4095590..4106390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDC06_RS19935 (ABDC06_19935)	gspH	4095746..4096255 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
ABDC06_RS19940 (ABDC06_19940)	gspI	4096258..4096623 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDC06_RS19945 (ABDC06_19945)	gspJ	4096620..4097216 (+)	597	WP_099451072.1	type II secretion system minor pseudopilin GspJ	-
ABDC06_RS19950 (ABDC06_19950)	gspK	4097213..4098199 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
ABDC06_RS19955 (ABDC06_19955)	gspL	4098186..4099379 (+)	1194	WP_110226596.1	type II secretion system protein GspL	-
ABDC06_RS19960 (ABDC06_19960)	-	4099372..4099857 (+)	486	WP_004145896.1	type II secretion system protein M	-
ABDC06_RS19965 (ABDC06_19965)	-	4099847..4100593 (+)	747	WP_346802516.1	type II secretion system protein N	-
ABDC06_RS19970 (ABDC06_19970)	pilD	4100590..4101390 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABDC06_RS19975 (ABDC06_19975)	hrpB	4101438..4103867 (-)	2430	WP_110226595.1	ATP-dependent helicase HrpB	-
ABDC06_RS19980 (ABDC06_19980)	thpR	4103940..4104476 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDC06_RS19985 (ABDC06_19985)	sfsA	4104476..4105192 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDC06_RS19990 (ABDC06_19990)	dksA	4105355..4105810 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998533 ABDC06_RS19970 WP_004145898.1 4100590..4101390(+) (pilD) [Klebsiella pneumoniae strain SC-KP443]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998533 ABDC06_RS19970 WP_004145898.1 4100590..4101390(+) (pilD) [Klebsiella pneumoniae strain SC-KP443]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTCCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425