Detailed information NTG0998488

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDW86_RS23470
• Genome accession: NZ_CP155670
• Coordinates: 4538718..4539518 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 535
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4533718..4544518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDW86_RS23435 (ABDW86_23435)	gspH	4533874..4534389 (+)	516	WP_071570633.1	type II secretion system minor pseudopilin GspH	-
ABDW86_RS23440 (ABDW86_23440)	gspI	4534386..4534751 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDW86_RS23445 (ABDW86_23445)	gspJ	4534748..4535344 (+)	597	WP_023279276.1	type II secretion system minor pseudopilin GspJ	-
ABDW86_RS23450 (ABDW86_23450)	gspK	4535341..4536327 (+)	987	WP_023279277.1	type II secretion system minor pseudopilin GspK	-
ABDW86_RS23455 (ABDW86_23455)	gspL	4536314..4537507 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
ABDW86_RS23460 (ABDW86_23460)	-	4537500..4537985 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABDW86_RS23465 (ABDW86_23465)	-	4537975..4538721 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABDW86_RS23470 (ABDW86_23470)	pilD	4538718..4539518 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABDW86_RS23475 (ABDW86_23475)	hrpB	4539566..4541995 (-)	2430	WP_023300747.1	ATP-dependent helicase HrpB	-
ABDW86_RS23480 (ABDW86_23480)	thpR	4542068..4542604 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDW86_RS23485 (ABDW86_23485)	sfsA	4542604..4543320 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDW86_RS23490 (ABDW86_23490)	dksA	4543483..4543938 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998488 ABDW86_RS23470 WP_004145898.1 4538718..4539518(+) (pilD) [Klebsiella pneumoniae strain 535]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998488 ABDW86_RS23470 WP_004145898.1 4538718..4539518(+) (pilD) [Klebsiella pneumoniae strain 535]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425