Detailed information NTG0998462

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDW73_RS19240
• Genome accession: NZ_CP155667
• Coordinates: 3867295..3868095 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 1856
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3862295..3873095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDW73_RS19205 (ABDW73_19205)	gspH	3862451..3862966 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
ABDW73_RS19210 (ABDW73_19210)	gspI	3862963..3863328 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDW73_RS19215 (ABDW73_19215)	gspJ	3863325..3863921 (+)	597	WP_023279276.1	type II secretion system minor pseudopilin GspJ	-
ABDW73_RS19220 (ABDW73_19220)	gspK	3863918..3864904 (+)	987	WP_023279277.1	type II secretion system minor pseudopilin GspK	-
ABDW73_RS19225 (ABDW73_19225)	gspL	3864891..3866084 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
ABDW73_RS19230 (ABDW73_19230)	-	3866077..3866562 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABDW73_RS19235 (ABDW73_19235)	-	3866552..3867298 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABDW73_RS19240 (ABDW73_19240)	pilD	3867295..3868095 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABDW73_RS19245 (ABDW73_19245)	hrpB	3868143..3870572 (-)	2430	WP_023300747.1	ATP-dependent helicase HrpB	-
ABDW73_RS19250 (ABDW73_19250)	thpR	3870645..3871181 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDW73_RS19255 (ABDW73_19255)	sfsA	3871181..3871897 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDW73_RS19260 (ABDW73_19260)	dksA	3872060..3872515 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998462 ABDW73_RS19240 WP_004145898.1 3867295..3868095(+) (pilD) [Klebsiella pneumoniae strain 1856]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998462 ABDW73_RS19240 WP_004145898.1 3867295..3868095(+) (pilD) [Klebsiella pneumoniae strain 1856]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425