Detailed information NTG0998417

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABFE17_RS21730
• Genome accession: NZ_CP155657
• Coordinates: 4406506..4407306 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SC-KP368
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4401506..4412306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFE17_RS21695 (ABFE17_21695)	gspH	4401662..4402177 (+)	516	WP_049109823.1	type II secretion system minor pseudopilin GspH	-
ABFE17_RS21700 (ABFE17_21700)	gspI	4402174..4402539 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABFE17_RS21705 (ABFE17_21705)	gspJ	4402536..4403132 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
ABFE17_RS21710 (ABFE17_21710)	gspK	4403129..4404115 (+)	987	WP_077258802.1	type II secretion system minor pseudopilin GspK	-
ABFE17_RS21715 (ABFE17_21715)	gspL	4404102..4405295 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ABFE17_RS21720 (ABFE17_21720)	-	4405288..4405773 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABFE17_RS21725 (ABFE17_21725)	-	4405763..4406509 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABFE17_RS21730 (ABFE17_21730)	pilD	4406506..4407306 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABFE17_RS21735 (ABFE17_21735)	hrpB	4407354..4409783 (-)	2430	WP_049109826.1	ATP-dependent helicase HrpB	-
ABFE17_RS21740 (ABFE17_21740)	thpR	4409856..4410392 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABFE17_RS21745 (ABFE17_21745)	sfsA	4410392..4411108 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABFE17_RS21750 (ABFE17_21750)	dksA	4411271..4411726 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998417 ABFE17_RS21730 WP_004145898.1 4406506..4407306(+) (pilD) [Klebsiella pneumoniae strain SC-KP368]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998417 ABFE17_RS21730 WP_004145898.1 4406506..4407306(+) (pilD) [Klebsiella pneumoniae strain SC-KP368]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGAGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425