Detailed information NTG0998369

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDU67_RS22435
• Genome accession: NZ_CP155647
• Coordinates: 4465635..4466435 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 1475-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4460635..4471435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDU67_RS22400 (ABDU67_22400)	gspH	4460791..4461306 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
ABDU67_RS22405 (ABDU67_22405)	gspI	4461303..4461668 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABDU67_RS22410 (ABDU67_22410)	gspJ	4461665..4462261 (+)	597	WP_110231096.1	type II secretion system minor pseudopilin GspJ	-
ABDU67_RS22415 (ABDU67_22415)	gspK	4462258..4463244 (+)	987	WP_346815393.1	type II secretion system minor pseudopilin GspK	-
ABDU67_RS22420 (ABDU67_22420)	gspL	4463231..4464424 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
ABDU67_RS22425 (ABDU67_22425)	-	4464417..4464902 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABDU67_RS22430 (ABDU67_22430)	-	4464892..4465638 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABDU67_RS22435 (ABDU67_22435)	pilD	4465635..4466435 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
ABDU67_RS22440 (ABDU67_22440)	hrpB	4466483..4468912 (-)	2430	WP_346815394.1	ATP-dependent helicase HrpB	-
ABDU67_RS22445 (ABDU67_22445)	thpR	4468985..4469521 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ABDU67_RS22450 (ABDU67_22450)	sfsA	4469521..4470237 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABDU67_RS22455 (ABDU67_22455)	dksA	4470400..4470855 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=998369 ABDU67_RS22435 WP_004213441.1 4465635..4466435(+) (pilD) [Klebsiella pneumoniae strain 1475-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=998369 ABDU67_RS22435 WP_004213441.1 4465635..4466435(+) (pilD) [Klebsiella pneumoniae strain 1475-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425