Detailed information NTG0998294

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABEG12_RS24385
• Genome accession: NZ_CP155639
• Coordinates: 5239925..5240797 (+)
• Length: 290 a.a.
• NCBI ID: WP_023092875.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain TY922
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5234925..5245797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEG12_RS24370 (ABEG12_24370)	-	5236308..5236772 (-)	465	WP_023092872.1	pilin	-
ABEG12_RS24375 (ABEG12_24375)	pilB	5237003..5238703 (+)	1701	WP_023092873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABEG12_RS24380 (ABEG12_24380)	pilC	5238707..5239924 (+)	1218	WP_033995372.1	type II secretion system F family protein	Machinery gene
ABEG12_RS24385 (ABEG12_24385)	pilD	5239925..5240797 (+)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ABEG12_RS24390 (ABEG12_24390)	coaE	5240794..5241405 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
ABEG12_RS24395 (ABEG12_24395)	yacG	5241402..5241602 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ABEG12_RS24400 (ABEG12_24400)	-	5241639..5241848 (-)	210	WP_003094660.1	hypothetical protein	-
ABEG12_RS24405 (ABEG12_24405)	-	5241954..5242643 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
ABEG12_RS24410 (ABEG12_24410)	-	5242640..5243110 (-)	471	WP_003094664.1	hypothetical protein	-
ABEG12_RS24415 (ABEG12_24415)	-	5243107..5243532 (-)	426	WP_003094666.1	GNAT family N-acetyltransferase	-
ABEG12_RS24420 (ABEG12_24420)	-	5243665..5244294 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ABEG12_RS24425 (ABEG12_24425)	-	5244291..5244740 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
ABEG12_RS24430 (ABEG12_24430)	-	5244766..5244936 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31861.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=998294 ABEG12_RS24385 WP_023092875.1 5239925..5240797(+) (pilD) [Pseudomonas aeruginosa strain TY922]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVMV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=998294 ABEG12_RS24385 WP_023092875.1 5239925..5240797(+) (pilD) [Pseudomonas aeruginosa strain TY922]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTTACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGATGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476