Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABEG09_RS10860 | Genome accession | NZ_CP155637 |
| Coordinates | 2253302..2253682 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain TY918 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2248302..2258682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEG09_RS10830 (ABEG09_10830) | tadA | 2248420..2248923 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABEG09_RS10835 (ABEG09_10835) | - | 2248930..2250054 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABEG09_RS10840 (ABEG09_10840) | ung | 2250051..2250764 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABEG09_RS10845 (ABEG09_10845) | - | 2250815..2251411 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABEG09_RS10850 (ABEG09_10850) | gspK | 2251642..2252601 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABEG09_RS10855 (ABEG09_10855) | xcpW | 2252601..2253302 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABEG09_RS10860 (ABEG09_10860) | xcpV | 2253302..2253682 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABEG09_RS10865 (ABEG09_10865) | - | 2253672..2254226 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABEG09_RS10870 (ABEG09_10870) | - | 2254236..2254844 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABEG09_RS10875 (ABEG09_10875) | - | 2254882..2255655 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABEG09_RS10880 (ABEG09_10880) | - | 2255673..2256014 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABEG09_RS10885 (ABEG09_10885) | - | 2256026..2257006 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABEG09_RS10890 (ABEG09_10890) | kdsB | 2257018..2257779 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=998251 ABEG09_RS10860 WP_000836911.1 2253302..2253682(-) (xcpV) [Acinetobacter baumannii strain TY918]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=998251 ABEG09_RS10860 WP_000836911.1 2253302..2253682(-) (xcpV) [Acinetobacter baumannii strain TY918]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |