Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABEG07_RS04950 | Genome accession | NZ_CP155636 |
| Coordinates | 1052641..1053042 (+) | Length | 133 a.a. |
| NCBI ID | WP_002461219.1 | Uniprot ID | A0A853V538 |
| Organism | Staphylococcus lugdunensis strain SQ078 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1047641..1058042
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEG07_RS04925 (ABEG07_04925) | - | 1048925..1049326 (+) | 402 | WP_002461226.1 | F0F1 ATP synthase subunit epsilon | - |
| ABEG07_RS04930 (ABEG07_04930) | - | 1049464..1049697 (+) | 234 | WP_002478965.1 | DUF1146 family protein | - |
| ABEG07_RS04935 (ABEG07_04935) | murA | 1049861..1051126 (+) | 1266 | WP_002461223.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ABEG07_RS04940 (ABEG07_04940) | fabZ | 1051163..1051603 (+) | 441 | WP_002461222.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ABEG07_RS04945 (ABEG07_04945) | - | 1052000..1052452 (-) | 453 | WP_002478966.1 | YwpF-like family protein | - |
| ABEG07_RS04950 (ABEG07_04950) | ssb | 1052641..1053042 (+) | 402 | WP_002461219.1 | single-stranded DNA-binding protein | Machinery gene |
| ABEG07_RS04955 (ABEG07_04955) | - | 1053521..1054228 (+) | 708 | WP_002478967.1 | transglycosylase family protein | - |
| ABEG07_RS04960 (ABEG07_04960) | tenA | 1054641..1055318 (+) | 678 | WP_002461217.1 | thiaminase II | - |
| ABEG07_RS04965 (ABEG07_04965) | thiD | 1055323..1056144 (+) | 822 | WP_002478968.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ABEG07_RS04970 (ABEG07_04970) | thiM | 1056137..1056925 (+) | 789 | WP_002478969.1 | hydroxyethylthiazole kinase | - |
| ABEG07_RS04975 (ABEG07_04975) | thiE | 1056928..1057566 (+) | 639 | WP_002478970.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 15388.56 Da Isoelectric Point: 6.7151
>NTDB_id=998199 ABEG07_RS04950 WP_002461219.1 1052641..1053042(+) (ssb) [Staphylococcus lugdunensis strain SQ078]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE
Nucleotide
Download Length: 402 bp
>NTDB_id=998199 ABEG07_RS04950 WP_002461219.1 1052641..1053042(+) (ssb) [Staphylococcus lugdunensis strain SQ078]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
69.697 |
99.248 |
0.692 |
| ssb | Staphylococcus aureus MW2 |
68.939 |
99.248 |
0.684 |