Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ABEG07_RS01790 Genome accession   NZ_CP155636
Coordinates   383885..384550 (+) Length   221 a.a.
NCBI ID   WP_002460617.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SQ078     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 378885..389550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG07_RS01770 (ABEG07_01770) - 379259..380530 (+) 1272 WP_002478509.1 nucleotide sugar dehydrogenase -
  ABEG07_RS01775 (ABEG07_01775) wecB 380573..381712 (+) 1140 WP_002478510.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -
  ABEG07_RS01780 (ABEG07_01780) - 381898..383346 (-) 1449 WP_002478511.1 alkaline phosphatase -
  ABEG07_RS01785 (ABEG07_01785) - 383565..383660 (+) 96 Protein_354 hypothetical protein -
  ABEG07_RS01790 (ABEG07_01790) braR 383885..384550 (+) 666 WP_002460617.1 response regulator transcription factor Regulator
  ABEG07_RS01795 (ABEG07_01795) braS 384556..385464 (+) 909 WP_002478513.1 sensor histidine kinase Regulator
  ABEG07_RS01800 (ABEG07_01800) - 385570..386319 (+) 750 WP_070817104.1 ABC transporter ATP-binding protein -
  ABEG07_RS01805 (ABEG07_01805) - 386342..388303 (+) 1962 WP_225307314.1 ABC transporter permease -
  ABEG07_RS01810 (ABEG07_01810) - 388411..388794 (+) 384 WP_346842676.1 hypothetical protein -
  ABEG07_RS01815 (ABEG07_01815) - 388881..389360 (+) 480 WP_002478517.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25798.73 Da        Isoelectric Point: 4.6843

>NTDB_id=998195 ABEG07_RS01790 WP_002460617.1 383885..384550(+) (braR) [Staphylococcus lugdunensis strain SQ078]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSWFVKYEPDLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNHNETTVRDCKLIIDEATLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=998195 ABEG07_RS01790 WP_002460617.1 383885..384550(+) (braR) [Staphylococcus lugdunensis strain SQ078]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGGTTCGTAAAGTATGAACCAGATTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CATAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATGATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAACGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.923

100

0.769

Multiple sequence alignment