Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   ABDZ24_RS24810 Genome accession   NZ_CP155623
Coordinates   4729224..4729907 (-) Length   227 a.a.
NCBI ID   WP_000350718.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 4724224..4734907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS24795 (ABDZ24_24870) pepF 4724405..4726231 (-) 1827 WP_000003387.1 oligoendopeptidase F Regulator
  ABDZ24_RS24800 (ABDZ24_24875) - 4726282..4727526 (-) 1245 WP_033655999.1 competence protein CoiA family protein -
  ABDZ24_RS24805 (ABDZ24_24880) - 4727607..4729151 (-) 1545 WP_000799208.1 cardiolipin synthase -
  ABDZ24_RS24810 (ABDZ24_24885) mecA 4729224..4729907 (-) 684 WP_000350718.1 adaptor protein MecA Regulator
  ABDZ24_RS24815 (ABDZ24_24890) - 4730248..4730922 (+) 675 WP_000362606.1 TerC family protein -
  ABDZ24_RS24820 (ABDZ24_24895) spx 4730972..4731367 (-) 396 WP_000258267.1 transcriptional regulator Spx -
  ABDZ24_RS24825 (ABDZ24_24900) - 4731960..4732163 (+) 204 WP_097845339.1 hypothetical protein -
  ABDZ24_RS24830 (ABDZ24_24905) - 4732192..4733838 (-) 1647 WP_000728619.1 peptide ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 227 a.a.        Molecular weight: 26995.05 Da        Isoelectric Point: 3.9986

>NTDB_id=998145 ABDZ24_RS24810 WP_000350718.1 4729224..4729907(-) (mecA) [Bacillus paramobilis strain N24509]
MDIERINDHTMKFFITYIDIEDRGFNREEIWYDRERSEELFWEMMDEARDHDDFFIDGPLWIQVQAVDKGIEVLVTKAEL
SKDGQKLELPIGVDKIIDIPLDEGIESLFQQELVEEVEEQTGTNFNEDGTFGFLIKFNDFEDVISLSHRLIFEDIKDELY
SFENRYYVYVEFDEVLHDEEEIDRILSIVLEYGEESTLTIHRVSEYGKQIVKEHALETIRNNFPAKT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=998145 ABDZ24_RS24810 WP_000350718.1 4729224..4729907(-) (mecA) [Bacillus paramobilis strain N24509]
TTGGATATTGAAAGAATTAATGACCATACGATGAAATTTTTTATTACGTACATTGACATAGAGGACAGAGGGTTTAATCG
TGAAGAAATTTGGTACGACCGCGAACGAAGTGAAGAGCTCTTTTGGGAGATGATGGACGAAGCTCGTGATCATGATGATT
TCTTTATTGATGGACCGTTATGGATTCAAGTGCAAGCAGTCGATAAAGGGATTGAAGTACTTGTAACGAAAGCAGAGCTT
TCAAAGGATGGACAAAAGTTAGAACTACCAATAGGTGTAGATAAAATTATAGACATTCCTCTAGATGAAGGCATTGAATC
ATTATTCCAGCAAGAATTAGTGGAAGAGGTAGAGGAACAAACAGGAACAAACTTTAACGAAGATGGTACGTTTGGCTTTT
TAATTAAGTTTAATGATTTTGAAGATGTCATTTCATTAAGCCACCGTCTTATCTTTGAAGATATAAAAGATGAGCTGTAT
TCATTTGAGAACCGCTATTATGTATATGTGGAATTCGATGAAGTGCTACATGATGAAGAAGAAATTGATCGTATTTTAAG
TATTGTTTTAGAGTACGGAGAAGAATCAACTTTAACAATTCATCGTGTAAGTGAGTATGGGAAACAAATTGTGAAAGAGC
ATGCGCTTGAAACAATTCGCAATAATTTTCCTGCTAAAACGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

56.14

100

0.564


Multiple sequence alignment