Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABDZ24_RS24795 Genome accession   NZ_CP155623
Coordinates   4724405..4726231 (-) Length   608 a.a.
NCBI ID   WP_000003387.1    Uniprot ID   A0A2B5KPS9
Organism   Bacillus paramobilis strain N24509     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 4719405..4731231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS24760 (ABDZ24_24835) - 4719819..4720616 (-) 798 WP_000673186.1 NAD kinase -
  ABDZ24_RS24765 (ABDZ24_24840) - 4720635..4721273 (-) 639 WP_001081484.1 GTP pyrophosphokinase family protein -
  ABDZ24_RS24770 (ABDZ24_24845) - 4721304..4721675 (-) 372 WP_001179996.1 hypothetical protein -
  ABDZ24_RS24775 (ABDZ24_24850) - 4721822..4722400 (+) 579 WP_000191099.1 CYTH domain-containing protein -
  ABDZ24_RS24780 (ABDZ24_24855) - 4722581..4722979 (+) 399 WP_000043382.1 hypothetical protein -
  ABDZ24_RS24785 (ABDZ24_24860) - 4722979..4723872 (+) 894 WP_000360655.1 ClpXP adapter SpxH family protein -
  ABDZ24_RS24790 (ABDZ24_24865) - 4724103..4724276 (+) 174 WP_002051510.1 hypothetical protein -
  ABDZ24_RS24795 (ABDZ24_24870) pepF 4724405..4726231 (-) 1827 WP_000003387.1 oligoendopeptidase F Regulator
  ABDZ24_RS24800 (ABDZ24_24875) - 4726282..4727526 (-) 1245 WP_033655999.1 competence protein CoiA family protein -
  ABDZ24_RS24805 (ABDZ24_24880) - 4727607..4729151 (-) 1545 WP_000799208.1 cardiolipin synthase -
  ABDZ24_RS24810 (ABDZ24_24885) mecA 4729224..4729907 (-) 684 WP_000350718.1 adaptor protein MecA Regulator
  ABDZ24_RS24815 (ABDZ24_24890) - 4730248..4730922 (+) 675 WP_000362606.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70297.60 Da        Isoelectric Point: 4.6462

>NTDB_id=998144 ABDZ24_RS24795 WP_000003387.1 4724405..4726231(-) (pepF) [Bacillus paramobilis strain N24509]
MSEQNTAKTLPDRKEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLYTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=998144 ABDZ24_RS24795 WP_000003387.1 4724405..4726231(-) (pepF) [Bacillus paramobilis strain N24509]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGCAAAGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCCATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTACAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTGCATCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGCG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACATACGGAAAATATAAGAATACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCACGTGTTCGTAAATACGATTCTGCACGTCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAGCTGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTGTTAAAATCTTTAAACGTACTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGGAAGCGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATATACACTTGCTCATGAGTTCGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATATGGCGATTATTCAATCTTCGTTGCAGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCGGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCAACAGCTCTATCTAAACAAATTTTAGAAGAGGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5KPS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment