Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABDZ24_RS09595 Genome accession   NZ_CP155623
Coordinates   1752108..1753847 (+) Length   579 a.a.
NCBI ID   WP_000947744.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747108..1758847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS09575 (ABDZ24_09595) ispA 1747320..1748210 (+) 891 WP_000150372.1 (2E,6E)-farnesyl diphosphate synthase -
  ABDZ24_RS09580 (ABDZ24_09600) dxs 1748513..1750405 (+) 1893 WP_000366438.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABDZ24_RS09585 (ABDZ24_09605) - 1750409..1751248 (+) 840 WP_001274748.1 TlyA family RNA methyltransferase -
  ABDZ24_RS09590 (ABDZ24_09610) argR 1751391..1751840 (+) 450 WP_001032581.1 arginine repressor ArgR -
  ABDZ24_RS09595 (ABDZ24_09615) recN 1752108..1753847 (+) 1740 WP_000947744.1 DNA repair protein RecN Machinery gene
  ABDZ24_RS09600 (ABDZ24_09620) spoIVB 1753966..1755264 (+) 1299 WP_346817817.1 SpoIVB peptidase -
  ABDZ24_RS09605 (ABDZ24_09625) spo0A 1755552..1756346 (+) 795 WP_033656399.1 sporulation transcription factor Spo0A Regulator
  ABDZ24_RS09610 (ABDZ24_09630) - 1756638..1758164 (+) 1527 WP_346817818.1 hypothetical protein -
  ABDZ24_RS09615 (ABDZ24_09635) - 1758351..1758497 (-) 147 WP_001247671.1 YycC family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65785.85 Da        Isoelectric Point: 4.8574

>NTDB_id=998130 ABDZ24_RS09595 WP_000947744.1 1752108..1753847(+) (recN) [Bacillus paramobilis strain N24509]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
SIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNIRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=998130 ABDZ24_RS09595 WP_000947744.1 1752108..1753847(+) (recN) [Bacillus paramobilis strain N24509]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGGAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTTACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
AGTATATATCAAAATGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAGAT
GGCGCATCGTTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAGT
TAACTGAAGAACGATTGCAAATTTCTAATTTTGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCACTAAGCGCT
GACGGACAAGGATTAGATAATATACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAACCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACACGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACCATTGAGAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCGACGTCGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGGGCCCCGGTAAGGCTGACAGCGGATGGCTATGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment