Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABDZ24_RS02585 Genome accession   NZ_CP155623
Coordinates   431675..433051 (-) Length   458 a.a.
NCBI ID   WP_001085204.1    Uniprot ID   A0A0J7D6B4
Organism   Bacillus paramobilis strain N24509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426675..438051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS02565 (ABDZ24_02570) ispF 428039..428515 (-) 477 WP_000488390.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABDZ24_RS02570 (ABDZ24_02575) ispD 428631..429311 (-) 681 WP_000288280.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABDZ24_RS02575 (ABDZ24_02580) - 429328..430437 (-) 1110 WP_000919678.1 PIN/TRAM domain-containing protein -
  ABDZ24_RS02580 (ABDZ24_02585) disA 430598..431671 (-) 1074 WP_000392166.1 DNA integrity scanning diadenylate cyclase DisA -
  ABDZ24_RS02585 (ABDZ24_02590) radA 431675..433051 (-) 1377 WP_001085204.1 DNA repair protein RadA Machinery gene
  ABDZ24_RS02590 (ABDZ24_02595) clpC 433148..435583 (-) 2436 WP_061678382.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ABDZ24_RS02595 (ABDZ24_02600) - 435606..436670 (-) 1065 WP_000050824.1 protein arginine kinase -
  ABDZ24_RS02600 (ABDZ24_02605) - 436675..437223 (-) 549 WP_000128407.1 UvrB/UvrC motif-containing protein -
  ABDZ24_RS02605 (ABDZ24_02610) ctsR 437396..437857 (-) 462 WP_001244555.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49884.59 Da        Isoelectric Point: 7.4250

>NTDB_id=998108 ABDZ24_RS02585 WP_001085204.1 431675..433051(-) (radA) [Bacillus paramobilis strain N24509]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTTPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=998108 ABDZ24_RS02585 WP_001085204.1 431675..433051(-) (radA) [Bacillus paramobilis strain N24509]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAGTCACCAAAATATATGGGGAAATGCCCTGGTTG
TGGTCAATGGAATACACTTGTTGAAGAGATGGAACCGGTTGTATCATCAAGACGCCTTAATTATGCCAATGCAATTCAAT
CAGAAGTAACAAAACCAAGACGCCTAACAGAAGTAGAAACAAAATCTGAGGCACGTATTGAAACGAAATTCCAAGAGTTT
AACCGTGTACTTGGTGGTGGGATTGTAGATGGATCTTTAGTACTTATTGGTGGAGACCCTGGTATTGGAAAATCAACATT
GCTATTACAGATTTCATCACAATTAGCAGATTCTTCATATGATGTACTATATATATCAGGTGAAGAATCGGCAAAACAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGTAATCTATTTGTTGTAGCAGAGACAGATTTGCAGCGAATTGCT
GCACACATTGAAGAGATGAATCCAGCTTTTGTTGTTATTGATTCCATTCAAACGATACATTTACCTGAGGTAACGTCAGC
GCCGGGAAGTGTGGCACAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAAACGAAAGGAATTCCTATTTTTA
TCGTCGGACATGTAACAAAAGAGGGGGCAATTGCAGGACCTCGTATGTTAGAACATATGGTCGATGCAGTTCTTTACTTT
GAAGGAGATCGTCATCATACATATCGTATCTTGCGAGCTGTGAAGAATCGTTTTGGTTCCACGAATGAAATGGGTATTTT
TGAAATGAAAGAGCTTGGTCTTGCGGAAGTCTTAAACCCTTCTGAAATTTTTCTTGAGGAAAGACCCGTTGGAGTCGCAG
GATCAACAGTAGTTGCCTCAATGGAAGGAACAAGACCGGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCGACGGGAATTGATCATAACCGTGTATCGCTTATTATGGCAGTGCTAGAAAAAAGAACAGG
TTTATTATTGCAAAACCAAGACGCATATTTAAAAGTAGCAGGTGGTTTGAAATTAGATGAACCAGCAATTGATTTAGCTG
TGGCTTTAAGTATTGCTTCAAGTTTTAGAGATAAACCTACGACACCAACTGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGTGCTATTATTCC
TAGAAAAAATTTGGGGGGATGGACAATCCCGGATGGGATTGAGGTAGTAGGTGTATCTAATTTAGGGGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J7D6B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.728

100

0.749
  radA Streptococcus pneumoniae Rx1

64.238

98.908

0.635
  radA Streptococcus pneumoniae D39

64.238

98.908

0.635
  radA Streptococcus pneumoniae R6

64.238

98.908

0.635
  radA Streptococcus pneumoniae TIGR4

64.238

98.908

0.635
  radA Streptococcus mitis SK321

64.238

98.908

0.635
  radA Streptococcus mitis NCTC 12261

64.018

98.908

0.633

Multiple sequence alignment