Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ELZ63_RS09260 Genome accession   NZ_LR134171
Coordinates   1867398..1868633 (-) Length   411 a.a.
NCBI ID   WP_005658618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862398..1873633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS09225 (NCTC12699_01840) - 1862894..1863514 (-) 621 WP_011272188.1 YigZ family protein -
  ELZ63_RS09230 (NCTC12699_01841) tusA 1863630..1863869 (+) 240 WP_005661958.1 sulfurtransferase TusA -
  ELZ63_RS09235 (NCTC12699_01842) htpX 1863912..1864766 (-) 855 WP_172454848.1 protease HtpX -
  ELZ63_RS09240 (NCTC12699_01843) - 1864930..1865319 (-) 390 WP_005630808.1 RidA family protein -
  ELZ63_RS09245 (NCTC12699_01844) - 1865376..1866128 (-) 753 WP_005687850.1 VacJ family lipoprotein -
  ELZ63_RS09250 (NCTC12699_01845) nusG 1866279..1866836 (-) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  ELZ63_RS09255 (NCTC12699_01846) secE 1866838..1867254 (-) 417 WP_005658616.1 preprotein translocase subunit SecE -
  ELZ63_RS09260 (NCTC12699_01847) clpX 1867398..1868633 (-) 1236 WP_005658618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ELZ63_RS09265 (NCTC12699_01848) clpP 1868643..1869254 (-) 612 WP_257003823.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ELZ63_RS09270 (NCTC12699_01849) tig 1869347..1870645 (-) 1299 WP_065245481.1 trigger factor -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45610.20 Da        Isoelectric Point: 4.7350

>NTDB_id=998093 ELZ63_RS09260 WP_005658618.1 1867398..1868633(-) (clpX) [Haemophilus influenzae strain NCTC12699]
MTDKDKDLHCSFCGKEKGEVDKLIAGTGGYICNECIELCHSMLEESNDENLEESAVENKDKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=998093 ELZ63_RS09260 WP_005658618.1 1867398..1868633(-) (clpX) [Haemophilus influenzae strain NCTC12699]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAAGAAAAAGGCGAAGTAGATAAATTAATTGCTGGCAC
AGGCGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTAATGATGAAAATTTAGAGGAAA
GTGCGGTCGAAAATAAAGATAAATTGCCAACGCCTCACGAAATTCGCGCCCATCTGGATGATTATGTTATCGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGCAAAAGTAATATTTTACTTATAGGGCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCAGATGCAACCACATTAACGGAAGCTGGTTATGTGGGAGAAGATGTAGAGAATGTATTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGGGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGTGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGACTTAA
TGAAATTTGGTTTAATTCCAGAATTTATTGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGTGCACGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.843

99.27

0.574
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

97.08

0.535

Multiple sequence alignment