Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   AAH949_RS04960 Genome accession   NZ_CP155620
Coordinates   965607..966263 (-) Length   218 a.a.
NCBI ID   WP_348518088.1    Uniprot ID   A0AAU7E6F3
Organism   Campylobacter sp. CCS1377     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 960607..971263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH949_RS04915 (AAH949_04915) - 960823..961668 (-) 846 WP_348518079.1 YqaJ viral recombinase family protein -
  AAH949_RS04920 (AAH949_04920) - 961670..961897 (-) 228 WP_348518080.1 helix-turn-helix domain-containing protein -
  AAH949_RS04925 (AAH949_04925) - 961997..962164 (-) 168 WP_348518081.1 hypothetical protein -
  AAH949_RS04930 (AAH949_04930) - 962561..962839 (-) 279 WP_348518082.1 hypothetical protein -
  AAH949_RS04935 (AAH949_04935) - 962984..963190 (+) 207 WP_348518083.1 hypothetical protein -
  AAH949_RS04940 (AAH949_04940) - 963204..963977 (+) 774 WP_348518084.1 sel1 repeat family protein -
  AAH949_RS04945 (AAH949_04945) - 963997..964386 (-) 390 WP_348518085.1 hypothetical protein -
  AAH949_RS04950 (AAH949_04950) - 964386..964871 (-) 486 WP_348518086.1 hypothetical protein -
  AAH949_RS04955 (AAH949_04955) - 964868..965530 (-) 663 WP_348518087.1 hypothetical protein -
  AAH949_RS04960 (AAH949_04960) CJE1441 965607..966263 (-) 657 WP_348518088.1 DNA/RNA non-specific endonuclease Regulator
  AAH949_RS04965 (AAH949_04965) - 966265..966498 (-) 234 WP_348518089.1 hypothetical protein -
  AAH949_RS04970 (AAH949_04970) - 966504..966932 (-) 429 WP_348518090.1 protein-export chaperone SecB -
  AAH949_RS04975 (AAH949_04975) - 966948..967634 (-) 687 WP_348518091.1 hypothetical protein -
  AAH949_RS04980 (AAH949_04980) - 967639..967998 (-) 360 WP_348518092.1 hypothetical protein -
  AAH949_RS04985 (AAH949_04985) - 968031..968741 (-) 711 WP_348518093.1 S24 family peptidase -
  AAH949_RS04990 (AAH949_04990) - 968853..969077 (+) 225 WP_348518094.1 hypothetical protein -
  AAH949_RS04995 (AAH949_04995) - 969074..969244 (+) 171 WP_348518095.1 hypothetical protein -
  AAH949_RS05000 (AAH949_05000) - 969234..969389 (-) 156 WP_348518096.1 hypothetical protein -
  AAH949_RS05005 (AAH949_05005) - 969508..969819 (-) 312 WP_348518097.1 hypothetical protein -
  AAH949_RS05010 (AAH949_05010) - 969862..970026 (+) 165 WP_348518098.1 hypothetical protein -
  AAH949_RS05015 (AAH949_05015) - 970026..971048 (+) 1023 WP_348518099.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25710.21 Da        Isoelectric Point: 9.5007

>NTDB_id=998066 AAH949_RS04960 WP_348518088.1 965607..966263(-) (CJE1441) [Campylobacter sp. CCS1377]
MNKIIMLIFLTSSLFAEYHEYKPSEEFAKYFTKQNCSQVLDKFYYINCYDYGYKGTKAVAYKLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTAQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQIALKLGSLEVL
NLVNYDNNPKRIKNQIAVPSSYIKILKGDNFEECYQVPNNDVENESIRNYKVDCDIIK

Nucleotide


Download         Length: 657 bp        

>NTDB_id=998066 AAH949_RS04960 WP_348518088.1 965607..966263(-) (CJE1441) [Campylobacter sp. CCS1377]
TTGAATAAAATAATAATGCTTATTTTTTTAACCTCATCTTTATTTGCTGAGTATCACGAATACAAACCAAGTGAAGAGTT
TGCCAAGTATTTTACTAAGCAAAATTGCTCACAAGTTTTAGATAAATTCTATTATATAAATTGTTATGATTATGGCTATA
AAGGCACTAAAGCAGTAGCTTATAAATTAGAAGCGGAAAATTTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACGAATATCCCTAAAAAATACCGCACTACATGGAGTGATTATAAAAATAGTGGCTATGATAGGGGGCATACTCT
TTCTAATGCTTCAATGAGAAAAACCGCTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATCACTCCACAAAATCCGC
AAATTAATCAAAGGGTTTGGAATAAAATAGAAAAAAGAGAAAGACAAATTGCTTTAAAACTTGGAAGTTTAGAAGTTTTA
AATCTAGTTAATTATGATAACAATCCTAAAAGAATTAAAAATCAAATAGCTGTACCAAGTAGTTATATTAAGATTTTAAA
AGGCGACAATTTTGAAGAATGCTATCAAGTGCCAAATAACGATGTAGAAAATGAGAGTATAAGAAATTATAAGGTTGATT
GTGATATTATTAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

90.05

92.202

0.83
  CJE0566 Campylobacter jejuni RM1221

88.177

93.119

0.821

Multiple sequence alignment