Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAH949_RS03300 Genome accession   NZ_CP155620
Coordinates   644146..644925 (+) Length   259 a.a.
NCBI ID   WP_134238953.1    Uniprot ID   A0A4Y8BLE4
Organism   Campylobacter sp. CCS1377     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 639146..649925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH949_RS03285 (AAH949_03285) - 640027..641967 (-) 1941 WP_348518969.1 ribonuclease R family protein -
  AAH949_RS03290 (AAH949_03290) ilvC 642113..643135 (+) 1023 WP_348518970.1 ketol-acid reductoisomerase -
  AAH949_RS03295 (AAH949_03295) - 643137..644156 (+) 1020 WP_348518971.1 divergent polysaccharide deacetylase family protein -
  AAH949_RS03300 (AAH949_03300) dprA 644146..644925 (+) 780 WP_134238953.1 DNA-processing protein DprA Machinery gene
  AAH949_RS03305 (AAH949_03305) ruvX 644922..645308 (+) 387 WP_348518972.1 Holliday junction resolvase RuvX -
  AAH949_RS03310 (AAH949_03310) - 645295..646194 (+) 900 WP_348518973.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AAH949_RS03315 (AAH949_03315) - 646453..647430 (+) 978 WP_348518974.1 agmatine deiminase family protein -
  AAH949_RS03320 (AAH949_03320) - 647427..648314 (+) 888 WP_134238949.1 cation diffusion facilitator family transporter -
  AAH949_RS03325 (AAH949_03325) - 648311..649183 (+) 873 WP_348518975.1 N-carbamoylputrescine amidohydrolase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28922.65 Da        Isoelectric Point: 7.6136

>NTDB_id=998063 AAH949_RS03300 WP_134238953.1 644146..644925(+) (dprA) [Campylobacter sp. CCS1377]
MASKILAQELSNSLFSALDKKPKNIYYKGNLELLDKRKVAIIGSRKMSVYTKNCVFELANYLKMADVCVVSGGALGVDIV
ASKAAMPLTIGIFANGLDRIYPKSNENIINEIYTNALALSENEDSYIPKNYDFLLRNRLIIALSEAVIIAQADLKSGSMQ
SARLALEMKKPLYVLPHRINESRGTNSLIKERKAELITDFKDFASCFGDITEKPSDEILEFCKKGVSVDEAVAVFGQKIY
EYELERKIEIDGVYIKVLI

Nucleotide


Download         Length: 780 bp        

>NTDB_id=998063 AAH949_RS03300 WP_134238953.1 644146..644925(+) (dprA) [Campylobacter sp. CCS1377]
ATGGCAAGTAAAATTTTAGCACAAGAATTATCAAACAGTCTTTTTTCTGCTTTGGATAAAAAGCCAAAGAATATCTATTA
TAAGGGGAATTTAGAGCTTTTGGATAAAAGAAAGGTTGCTATCATCGGCTCAAGAAAAATGAGTGTTTATACTAAAAATT
GTGTTTTTGAATTGGCAAATTATCTAAAAATGGCTGATGTTTGCGTGGTAAGTGGCGGGGCTTTGGGTGTGGATATTGTG
GCAAGTAAGGCTGCTATGCCATTAACGATCGGAATTTTTGCAAATGGGCTTGATAGAATTTATCCCAAAAGCAATGAAAA
TATAATTAATGAAATTTACACCAATGCTTTAGCCTTAAGTGAAAATGAAGATAGTTATATCCCAAAAAATTATGATTTTT
TACTTAGAAACCGTTTGATTATTGCTTTAAGCGAAGCAGTAATTATTGCTCAAGCGGATTTAAAAAGTGGTTCTATGCAA
AGCGCTAGACTTGCTTTAGAGATGAAAAAACCTTTATATGTTTTACCGCATAGGATTAATGAGAGTCGAGGCACAAATTC
GCTCATAAAAGAAAGAAAAGCAGAATTAATAACTGATTTTAAAGATTTCGCCTCGTGTTTTGGGGATATAACAGAAAAGC
CAAGTGATGAAATTTTAGAATTTTGTAAAAAGGGCGTGAGTGTGGATGAGGCTGTGGCGGTTTTTGGGCAAAAAATTTAT
GAATATGAACTCGAAAGGAAAATCGAAATTGATGGGGTTTATATAAAGGTTTTGATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(16-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8BLE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.38

99.614

0.691
  dprA Helicobacter pylori 26695

48.133

93.05

0.448

Multiple sequence alignment