Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ELZ63_RS01950 Genome accession   NZ_LR134171
Coordinates   382904..383518 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 377904..388518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS01925 (NCTC12699_00385) - 378472..378990 (-) 519 WP_061724196.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ELZ63_RS01930 (NCTC12699_00386) aspS 379209..380975 (+) 1767 WP_061724194.1 aspartate--tRNA ligase -
  ELZ63_RS01935 (NCTC12699_00387) nudB 380997..381470 (+) 474 WP_061724192.1 dihydroneopterin triphosphate diphosphatase -
  ELZ63_RS01940 (NCTC12699_00388) - 381482..382222 (+) 741 WP_005662961.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ELZ63_RS01945 (NCTC12699_00389) ruvC 382269..382841 (+) 573 WP_065245003.1 crossover junction endodeoxyribonuclease RuvC -
  ELZ63_RS01950 (NCTC12699_00390) ruvA 382904..383518 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  ELZ63_RS01955 (NCTC12699_00391) ruvB 383526..384533 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ELZ63_RS01960 (NCTC12699_00392) - 384588..384872 (-) 285 WP_061724188.1 DUF5339 domain-containing protein -
  ELZ63_RS01965 (NCTC12699_00393) xerD 385045..385938 (-) 894 WP_005668988.1 site-specific tyrosine recombinase XerD -
  ELZ63_RS01970 (NCTC12699_00394) - 385969..387135 (-) 1167 WP_061724186.1 3-phenylpropionate MFS transporter -
  ELZ63_RS01975 (NCTC12699_00395) proC 387135..387950 (-) 816 WP_005662973.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=998048 ELZ63_RS01950 WP_005659994.1 382904..383518(+) (ruvA) [Haemophilus influenzae strain NCTC12699]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=998048 ELZ63_RS01950 WP_005659994.1 382904..383518(+) (ruvA) [Haemophilus influenzae strain NCTC12699]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGTGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment