Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ELZ62_RS01495 Genome accession   NZ_LR134168
Coordinates   293215..294450 (-) Length   411 a.a.
NCBI ID   WP_015701822.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11394     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 288215..299450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ62_RS01460 (NCTC11394_00288) - 288710..289330 (-) 621 WP_032826248.1 YigZ family protein -
  ELZ62_RS01465 (NCTC11394_00289) tusA 289446..289685 (+) 240 WP_005665561.1 sulfurtransferase TusA -
  ELZ62_RS01470 (NCTC11394_00290) htpX 289727..290581 (-) 855 WP_172454848.1 protease HtpX -
  ELZ62_RS01475 (NCTC11394_00291) - 290748..291137 (-) 390 WP_005630808.1 RidA family protein -
  ELZ62_RS01480 (NCTC11394_00292) - 291193..291945 (-) 753 WP_015701823.1 VacJ family lipoprotein -
  ELZ62_RS01485 (NCTC11394_00293) nusG 292096..292653 (-) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  ELZ62_RS01490 (NCTC11394_00294) secE 292655..293071 (-) 417 WP_005658616.1 preprotein translocase subunit SecE -
  ELZ62_RS01495 (NCTC11394_00295) clpX 293215..294450 (-) 1236 WP_015701822.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ELZ62_RS01500 (NCTC11394_00296) clpP 294460..295071 (-) 612 WP_257005503.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ELZ62_RS01505 (NCTC11394_00297) tig 295164..296462 (-) 1299 WP_015701821.1 trigger factor -
  ELZ62_RS09435 - 296765..296862 (+) 98 Protein_289 hypothetical protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45737.30 Da        Isoelectric Point: 4.7428

>NTDB_id=997977 ELZ62_RS01495 WP_015701822.1 293215..294450(-) (clpX) [Haemophilus influenzae strain NCTC11394]
MTDKDKDLHCSFCGKEKGEVDKLISGTDGYICNECIELCHSMLEESHDKNLEESAVENEEKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=997977 ELZ62_RS01495 WP_015701822.1 293215..294450(-) (clpX) [Haemophilus influenzae strain NCTC11394]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAGGAAAAAGGCGAAGTAGATAAATTAATTTCTGGCAC
AGACGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTCATGATAAAAATTTAGAGGAAA
GTGCGGTAGAAAATGAAGAAAAATTACCAACGCCTCACGAAATTCGCGCTCATCTAGATGATTATGTTATCGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGTAAAAGTAATATTTTACTTATAGGCCCTACAGGTAGTGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCGGATGCAACCACATTAACGGAAGCTGGTTATGTGGGGGAAGATGTGGAGAATGTGTTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTTCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTGA
TGAAATTTGGTTTAATTCCAGAATTTATTGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGGGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.353

99.27

0.569
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.5

97.324

0.54

Multiple sequence alignment