Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAHK14_RS09940 Genome accession   NZ_CP155576
Coordinates   2014242..2015648 (-) Length   468 a.a.
NCBI ID   WP_065254995.1    Uniprot ID   A0A1B8Q2Z1
Organism   Moraxella sp. K1664     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009242..2020648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHK14_RS09920 (AAHK14_09920) - 2009602..2010618 (-) 1017 WP_083108404.1 ABC transporter substrate-binding protein -
  AAHK14_RS09925 (AAHK14_09925) - 2011256..2012284 (+) 1029 WP_083108321.1 IS110 family transposase -
  AAHK14_RS09930 (AAHK14_09930) - 2012444..2013211 (-) 768 WP_227514645.1 ABC transporter permease -
  AAHK14_RS09935 (AAHK14_09935) - 2013376..2014233 (+) 858 WP_065254996.1 hypothetical protein -
  AAHK14_RS09940 (AAHK14_09940) radA 2014242..2015648 (-) 1407 WP_065254995.1 DNA repair protein RadA Machinery gene
  AAHK14_RS09945 (AAHK14_09945) sodA 2016016..2016630 (+) 615 WP_065254994.1 superoxide dismutase [Mn] -
  AAHK14_RS09950 (AAHK14_09950) - 2016887..2017837 (-) 951 WP_115246899.1 IS3 family transposase -
  AAHK14_RS09955 (AAHK14_09955) - 2017810..2018346 (-) 537 WP_065256690.1 helix-turn-helix domain-containing protein -
  AAHK14_RS09960 (AAHK14_09960) - 2018450..2018941 (-) 492 WP_065254868.1 cytochrome c -
  AAHK14_RS09965 (AAHK14_09965) hemF 2019117..2020094 (-) 978 WP_065254867.1 oxygen-dependent coproporphyrinogen oxidase -
  AAHK14_RS09970 (AAHK14_09970) - 2020216..2020338 (-) 123 WP_255518667.1 hypothetical protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49684.23 Da        Isoelectric Point: 7.6602

>NTDB_id=997925 AAHK14_RS09940 WP_065254995.1 2014242..2015648(-) (radA) [Moraxella sp. K1664]
MAKKSSYVCQSCGANYGKWSGQCADCGEWNTLTEAPNVAMPHHKKTTAKSAPKTANYAGDSSGVMTLANVGFSLETRMPT
GLGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSDSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLA
ETNVETICMALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEH
MVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQ
ALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIYTSGQDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPARLCV
FGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIIPKANAPKTGDKNFAKINIIAVDRLDDALIRAFELA

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=997925 AAHK14_RS09940 WP_065254995.1 2014242..2015648(-) (radA) [Moraxella sp. K1664]
ATGGCAAAAAAATCCTCTTACGTCTGCCAATCCTGTGGAGCCAATTACGGAAAATGGTCAGGGCAATGTGCCGACTGTGG
CGAATGGAACACGCTCACCGAAGCCCCCAATGTCGCCATGCCTCACCACAAAAAAACCACCGCCAAATCCGCTCCAAAAA
CCGCCAACTATGCAGGCGACAGCTCTGGGGTCATGACCCTTGCCAATGTCGGCTTTTCGCTAGAAACTCGTATGCCCACG
GGCTTGGGCGAGTTTGACCGTGTGCTTGGCGGTGGGCTTGTGGCAGGCTCGGTGGTGCTGATTGGGGGCGACCCGGGTAT
CGGCAAATCCACAATCCTTTTGCAGACCGCCATTAACATGGCAAGTAGCGACTCGCTCGCTGGCTCGGCTTTATATATCA
CAGGCGAAGAGAGCCTGTCGCAGGTTGCCATGCGTGCGGTGCGACTTGGGCTACCGACCGACCGCCTAAGGGTGCTTGCC
GAGACCAACGTTGAGACCATTTGCATGGCTCTCACCGCCGAACAGCCCGCCATTGCCGTCATTGACTCAATCCAGACGCT
TTTTACCGAAGCCATACAGTCCGCCCCTGGGGGTGTCGCTCAAATCCGTGAATCCGCCGCCGTCTTGACACGCTATGCCA
AGCAGACAGGCACAGCACTGTTTTTGGTGGGACACGTTACCAAAGAAGGGGCGTTGGCAGGGCCTCGTGTGCTAGAACAC
ATGGTGGATACGGTGCTGTATTTTGAAGGCGAGTCCGATAGCCGATTTAGAATGATTCGTGCGGTAAAAAACCGTTTTGG
GGCGGTCAATGAACTGGGTATTTTTGGCATGACTGATACAGGCTTAAAGGAAGTTGCCAATCCGTCCGCCATTTTTTTGA
GCCGATATGACAAGCCCATTGCAGGGTCGGTGGTCATGGTCAGCCGTGAAGGCACACGCCCTTTGCTTGTGGAAGTTCAA
GCGTTGGTGGACGACTCACAAGGTCAGCCCAGACGTATGGCGTTGGGGCTTGATTATCAACGCCTGTCCATGCTCCTTGC
GGTCATGCACCGTCATGGCGGTATCTACACAAGCGGTCAGGACGTGTATGTCAATGTCGTGGGCGGGGTCAAGGTCATGG
AGACAGGCTCGGATTTGGCGGTGCTGATTGCCTGTGCGTCCAGCATTAAGGAAAAACCGCTCCCTGCACGGCTGTGTGTC
TTTGGTGAAGTGGGACTATCTGGCGAGATTCGCCCTGTGCCAAACGGTCAAGAACGCCTAAAAGAAGCAATGAAGCACGG
CTTTACCCACGCCATTATCCCCAAAGCCAACGCTCCCAAAACAGGCGATAAAAATTTTGCCAAAATAAACATCATTGCCG
TGGATAGACTAGATGATGCGTTGATAAGGGCGTTTGAGCTTGCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-437)

AAA domain (AAA_25)

(89-230)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8Q2Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.469

100

0.498
  radA Streptococcus mitis NCTC 12261

45.474

99.145

0.451
  radA Streptococcus pneumoniae Rx1

45.474

99.145

0.451
  radA Streptococcus pneumoniae D39

45.474

99.145

0.451
  radA Streptococcus pneumoniae R6

45.474

99.145

0.451
  radA Streptococcus pneumoniae TIGR4

45.474

99.145

0.451
  radA Streptococcus mitis SK321

45.474

99.145

0.451

Multiple sequence alignment