Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SriyCCGPB3_RS16855 Genome accession   NZ_CP155568
Coordinates   3632532..3633905 (+) Length   457 a.a.
NCBI ID   WP_110713353.1    Uniprot ID   -
Organism   Stenotrophomonas riyadhensis strain ESTM1A_MKCTX4_10a     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627532..3638905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SriyCCGPB3_RS16840 (SriyCCGPB3_003362) sucD 3628387..3629262 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  SriyCCGPB3_RS16845 (SriyCCGPB3_003363) sucC 3629283..3630452 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  SriyCCGPB3_RS16850 (SriyCCGPB3_003364) - 3630858..3632471 (+) 1614 WP_164162034.1 ATP-binding protein -
  SriyCCGPB3_RS16855 (SriyCCGPB3_003365) pilR 3632532..3633905 (+) 1374 WP_110713353.1 sigma-54 dependent transcriptional regulator Regulator
  SriyCCGPB3_RS16860 (SriyCCGPB3_003366) pilB 3634034..3635764 (-) 1731 WP_153855680.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SriyCCGPB3_RS16865 (SriyCCGPB3_003367) - 3635980..3636387 (-) 408 WP_180854230.1 pilin -
  SriyCCGPB3_RS16870 (SriyCCGPB3_003368) pilA2 3636513..3636962 (-) 450 WP_153855678.1 pilin Machinery gene
  SriyCCGPB3_RS16875 (SriyCCGPB3_003369) pilC 3637317..3638576 (+) 1260 WP_180854231.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49457.76 Da        Isoelectric Point: 6.4407

>NTDB_id=997816 SriyCCGPB3_RS16855 WP_110713353.1 3632532..3633905(+) (pilR) [Stenotrophomonas riyadhensis strain ESTM1A_MKCTX4_10a]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPAAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=997816 SriyCCGPB3_RS16855 WP_110713353.1 3632532..3633905(+) (pilR) [Stenotrophomonas riyadhensis strain ESTM1A_MKCTX4_10a]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGGCTGCCGGATGGCAACGGTATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACGCCGAACGCCCCGCGCCCGGCCCTGCTG
CCGAACAAGGCGCACGCCTGCTGGGTGCTTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCACGCACCATCCACGCCCAGGGCGCACG
TGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGTGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGTGCGGC
GAATGAGGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATTGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCCGCCGCGGTATTGGCACGCCTGGCCCGCAGCCATGGCCGCGCCACCCCGCTGCTGGCACCCTCGGCACTGGAGGC
GCTGGCGCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCCCCGCGCGCGCCCGGCAGCGCAGCGCACGCCGAAGCGGTG
GTGGACCTGCAACCTGGCAGCGCCGCCCTGCCCTCGTATATCGAGCAGCTGGAACGCAGTGCCATCCAGCGCGCATTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGAATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.939

99.781

0.628
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49

Multiple sequence alignment