Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KZZ19_RS20385 Genome accession   NZ_CP155559
Coordinates   3953202..3954941 (-) Length   579 a.a.
NCBI ID   WP_088097702.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3948202..3959941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS20370 (KZZ19_020365) - 3949886..3950449 (-) 564 WP_237979467.1 PRK06770 family protein -
  KZZ19_RS20375 (KZZ19_020370) spo0A 3950703..3951497 (-) 795 WP_140392546.1 sporulation transcription factor Spo0A Regulator
  KZZ19_RS20380 (KZZ19_020375) spoIVB 3951785..3953083 (-) 1299 WP_088097701.1 SpoIVB peptidase -
  KZZ19_RS20385 (KZZ19_020380) recN 3953202..3954941 (-) 1740 WP_088097702.1 DNA repair protein RecN Machinery gene
  KZZ19_RS20390 (KZZ19_020385) argR 3955209..3955658 (-) 450 WP_001032581.1 arginine repressor ArgR -
  KZZ19_RS20395 (KZZ19_020390) - 3955801..3956640 (-) 840 WP_237979468.1 TlyA family RNA methyltransferase -
  KZZ19_RS20400 (KZZ19_020395) dxs 3956644..3958536 (-) 1893 WP_237979469.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KZZ19_RS20405 (KZZ19_020400) ispA 3958839..3959729 (-) 891 WP_088097705.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65683.80 Da        Isoelectric Point: 4.8205

>NTDB_id=997760 KZZ19_RS20385 WP_088097702.1 3953202..3954941(-) (recN) [Bacillus thuringiensis strain HSY204]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEISKADLKMDEEIELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHDLAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=997760 KZZ19_RS20385 WP_088097702.1 3953202..3954941(-) (recN) [Bacillus thuringiensis strain HSY204]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAGTCGATTATTATCGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAGGCTGAGATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTTACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GGTATATATCAAAATGTATACGCTGACTATGAGAAGTTAAAGAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCAGTAAAGCGGATTTAAAGATGGATGAAGAAATTGAAT
TAACTGAAGAACGATTACAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTGAAGGAGTTAGAAAGTGTTATTCTGAAAGAAGCAACTTTGTTAAGTAATATGCGTCATGACCTTG
CGGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAACTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGCGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGAGCCCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCACTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACGATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACGGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment