Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   ELZ51_RS04235 Genome accession   NZ_LR134094
Coordinates   802683..806312 (+) Length   1209 a.a.
NCBI ID   WP_197715879.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 797683..811312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS04225 (NCTC4669_00889) - 798358..799284 (-) 927 WP_126426288.1 neutral zinc metallopeptidase -
  ELZ51_RS04230 (NCTC4669_00890) rexB 799459..802683 (+) 3225 WP_126426290.1 ATP-dependent nuclease subunit B Machinery gene
  ELZ51_RS04235 (NCTC4669_00891) rexA 802683..806312 (+) 3630 WP_197715879.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ELZ51_RS04240 (NCTC4669_00893) - 806469..807584 (+) 1116 Protein_794 aminotransferase -
  ELZ51_RS04245 (NCTC4669_00894) - 807653..808465 (+) 813 WP_126426294.1 transporter substrate-binding domain-containing protein -
  ELZ51_RS04250 (NCTC4669_00895) rpsU 808555..808731 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  ELZ51_RS04255 (NCTC4669_00896) mscL 808864..809238 (-) 375 WP_003050154.1 large conductance mechanosensitive channel protein MscL -
  ELZ51_RS04260 (NCTC4669_00897) dnaG 809366..811180 (+) 1815 WP_126427596.1 DNA primase -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 138468.15 Da        Isoelectric Point: 5.3012

>NTDB_id=997732 ELZ51_RS04235 WP_197715879.1 802683..806312(+) (rexA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MSFDPFLSPSAIAQLQEKEAQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFT
VKAATELRERIEKKLYAQIAKTSDPLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDILK
RDVFSKLFEEFMTQDDSSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGIEDVPKQEI
QLLLSTMQDTADQLREVTDMEDYGQLTKAGKPTAKYVKHLVIIEKLYEWARDFPHLYGRQGLSQLARDLTALLPTGNDVT
VAGIKYPVFKSLHQKLIRFRHLETILTYQPESIPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIR
QTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENFR
SQSEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSIGQKIASPEHRAKLLLYNTDCEDHLDIEDADDISPSEVTIVAKE
IIRLYNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSP
MFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFND
RFYFDFVGSQVKAEQAQVNLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKGLEF
KYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVA
MTRAEKQIYLIGKASKEKSQEFTDGKRLGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQ
SQQVLQPDDLKDNRQSADITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEFTLP
EFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALDLQKVEQFFTETALGKRFQTYSTNLYRE
APFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQIYGLPVTKKYLVLMG
GPELAIVTL

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=997732 ELZ51_RS04235 WP_197715879.1 802683..806312(+) (rexA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAACTACAAGAAAAAGAAGCTCAAAGTAGTCAAGCGCAAAA
AAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTATCAGCCTCAGCTGGATCTGGAAAAA
CCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTTACG
GTCAAAGCGGCTACCGAGTTACGTGAACGTATTGAAAAAAAACTGTATGCGCAAATTGCGAAAACCAGTGATCCTTTGCT
AAAAGCTTATCTAACAGACCAATTACAAGCTTTATCACAGGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAGTCC
TCATCCGTTACGGGTACAGCATTGGTATTTCCCCTCAATTTCGTATCATGCAAGATAAGGCGGAGCAAGACATTCTAAAG
CGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATTCGTCCTTGTTTAAGGCATTGGTCAAAAATTT
TTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTCGTCTATAGTTGCTACGCCTTTAGCCAATCTACCGAAAATC
CGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGATTGAAGATGTCCCTAAACAAGAGATT
CAACTCTTGCTGTCAACCATGCAAGATACCGCAGATCAGTTAAGAGAGGTGACTGACATGGAAGATTATGGTCAGCTGAC
AAAAGCTGGGAAACCAACAGCCAAATACGTCAAACATTTGGTCATAATAGAGAAGCTTTACGAATGGGCGCGTGACTTTC
CTCACCTCTATGGGAGACAGGGGTTAAGCCAATTGGCAAGGGACCTGACAGCTCTTTTGCCGACTGGAAATGATGTGACA
GTGGCTGGGATCAAATACCCTGTTTTCAAGAGTTTGCACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTTAAC
CTATCAGCCAGAAAGTATTCCCTTATTAGAGCTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATCTGGATGCCA
AAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGACATCAGG
CAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTACCAGGATAACAATCATATGCAAGAACGGCTGTTGAC
CTTATTATCAAATGGACATAACCGTTTTATGGTGGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATCCTC
AGATCTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTCCGG
AGTCAATCAGAAGTTTTAGAAGCTAGCAATGCTGTCTTTACTCATTTAATGGATGAGTCCTTAGGAGATATTTTGTATGA
TGAGCAGCACCAGTTGGTGGCAGGTAGCATTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTTATA
ATACCGATTGCGAAGATCATCTTGACATAGAAGATGCGGATGACATTTCTCCTAGTGAAGTGACCATCGTTGCTAAAGAA
ATCATTAGGTTATACAATGAACAGCACGTACCTTTTGAGGATATAACCCTCCTAGTATCATCCAGAACAAGAAATGATGC
CATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTACCTCAAGTCGGTTGAAG
TAATGGTGATGTTGGATACTTTACGTACTATTAATAACCCAAGAAATGATTATGCCTTGGTCGCCCTGTTGCGTTCACCG
ATGTTTGCTTTTGATGAAGATGAACTGACCAGGCTAGCCCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTATGA
TAAACTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGAGTTGGTCCATCAAGACCTAAAACTAAAACTAAGCAGGT
TTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAAATCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAATGAC
CGTTTCTATTTTGACTTTGTGGGTAGTCAAGTTAAAGCAGAACAGGCACAAGTTAATTTATATGCCTTAGCTCTTCGAGC
TAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGCTGGAAACACAAAATG
ATTTAGCCGATGTTGAGGTAGCTAGTCCTAAACAAGCGGTTAATCTGATGACCATTCACAAGTCCAAGGGATTGGAATTC
AAGTATGTCTTTCTCCTCAACTGTGATAAGCGTTTTGCCATGACAGATGTCCATGCGCCATTTATTTTAAGCCGTCAACA
GGGCATTGGTATTAAGTATTTAGCTGATGTCAAAGACGTTCTGGAAGAAAAAACGTTACCTTCAGTGAAAGTGAGTATGG
AAACTCTCCCCTATCAACTCAATAAACAAGAGCTGCGTTTGGCGACTCTATCTGAGCAAATGCGCTTACTCTATGTTGCT
ATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTCACCGATGGCAAACG
CTTGGGAAATCATTTGCCTTTAGCTCTGCGTGAGCGACTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATACCT
TCACTGCAGAAGATCTCCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATTTACAG
AGTCAACAGGTTTTACAACCGGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCTTAA
TAAGGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAGCTG
CTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTTATGGAAAAAAGTTATCGGACACTCAACGAATTTACCTTACCT
GAATTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGGTAGGGTCAGCCCTTCATCGACTCATGCAAGCCATCCCTTTAAC
GAAGCCAATCAGTTTGGCAACAATTGCGCAAGCGTTGGAAGAAATAGAAGCTGAAGCAGTGGTCAAAGCAGCCCTTGATT
TACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTTTCAAACCTACTCGACTAACCTTTACCGAGAA
GCTCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCTCTT
GTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTATCGTCATCCGAGTGACTTAAAAACACGCTATCAAC
AACAATTGGAATTATATGCAGAAGCGCTTAGCCAGATCTATGGACTTCCTGTAACCAAAAAGTACCTGGTGCTGATGGGC
GGACCAGAGTTGGCTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1039-1186)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.208

71.878

0.368