Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   ELZ51_RS04230 Genome accession   NZ_LR134094
Coordinates   799459..802683 (+) Length   1074 a.a.
NCBI ID   WP_126426290.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 794459..807683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS04205 (NCTC4669_00885) - 795680..796057 (+) 378 WP_003050145.1 OsmC family protein -
  ELZ51_RS04210 (NCTC4669_00886) - 796050..796436 (+) 387 WP_126426282.1 YbgA family protein -
  ELZ51_RS04215 (NCTC4669_00887) - 796510..797586 (+) 1077 WP_126426284.1 FtsX-like permease family protein -
  ELZ51_RS04220 (NCTC4669_00888) - 797596..798264 (+) 669 WP_126426286.1 ABC transporter ATP-binding protein -
  ELZ51_RS04225 (NCTC4669_00889) - 798358..799284 (-) 927 WP_126426288.1 neutral zinc metallopeptidase -
  ELZ51_RS04230 (NCTC4669_00890) rexB 799459..802683 (+) 3225 WP_126426290.1 ATP-dependent nuclease subunit B Machinery gene
  ELZ51_RS04235 (NCTC4669_00891) rexA 802683..806312 (+) 3630 WP_197715879.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ELZ51_RS04240 (NCTC4669_00893) - 806469..807584 (+) 1116 Protein_794 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123638.57 Da        Isoelectric Point: 5.1213

>NTDB_id=997731 ELZ51_RS04230 WP_126426290.1 799459..802683(+) (rexB) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTISNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMIQ
QDYHQDSALMSFAKTIDTGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQGLAEQYETKPIYSQSEKVFAPSFSRVTQLFEAHHDFSQVDWQLEEKDKEDIHIWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLIKSGLFGSFAD
SEVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEIREAIFSPLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KNLGQNELETEKNEEVWKTFTDVLTSFYQTFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSRKNHQTALSLLNAATQELVLSVPALVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEKDKTFWTVALRYLRRQLRHQQITLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAENRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALQVTDQIVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQFGPDDLGHLFGAMYLHLQEPKLDLATFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNAIYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLDQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=997731 ELZ51_RS04230 WP_126426290.1 799459..802683(+) (rexB) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTAGCTGAGGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGACCTTGCTACCAGAACGAG
GGTCCTTCTCTATTACTGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACAATCTCTAACTCTGAGTCAAAACAAGCC
TTGGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGACCCAGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGGATTATCTCCCTTGCCGAAGAACTCATGATTCAG
CAAGATTACCATCAAGACAGTGCTTTGATGTCTTTTGCTAAAACCATTGATACAGGTCAATTGGACGAACAACTGTCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAGCAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACGAGACAAAACCGATTTATTCTCAATCGGAAAAGGTCTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTCATCATGATTTTTCCCAAGTAGACTGGCAATTGGAAGAAAAAGATAAGG
AAGACATTCACATCTGGCAAAGCCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAATCTGATCAAATCAGGACTTTTTGGAAGTTTTGCCGAT
AGTGAAGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTTACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCGTTGGAGTTGTTAAACGAGATAAGAGAAGCTATTTTTTCTCCTTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGTTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAACCTGGGCCAAAATGAGCTAGAGACAGAGAAAAATGAAGAAGTTTGGAAAACATTCACCGACGTGTTAACCTCTTT
TTACCAGACTTTTGGTCAGGAAAAGTTGAAACTGGCGGACTGTCTTTCCTTGATCAAAATGGGAATGCAGTCGGCCCATT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCTCATTTTCCAAAGCAAGTCAAAGAGACAGGGTTACTTTCTGATCAAGAACGGGCAAG
AATTAATGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAGGAAAAATCATCAGACAGCTC
TTTCACTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCACTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTGGCTGACATGACCGAAAAGG
ACAAGACTTTTTGGACTGTTGCCCTTCGTTATCTCCGACGACAATTAAGACATCAGCAGATTACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAGGTTATTGAGGCACGTTTTCCAAGCGATCGTCCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGATTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCTATTCATCAAACTAACCAAGAAAAAGAATTTCAATATATCTATCAAGACAGTGCTGA
AAATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCGACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TAAGTCGACAAGAAGAACCTTTTGCCCTGCAAGTGACAGATCAGATAGTGGTCCATGGGATAATTGACCGGATCGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGCGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAATTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTAGACTTAGCAACTTTCAAAGCACTTGATGATAAACTGGTTGAAAGTATTTAT
AAAGAGTTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
AATTTACTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGACCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.245

100

0.431