Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABER85_RS14610 Genome accession   NZ_CP155547
Coordinates   3039192..3039602 (+) Length   136 a.a.
NCBI ID   WP_038347430.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3034192..3044602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS14595 (ABER85_14595) - 3035181..3037487 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABER85_RS14600 (ABER85_14600) - 3037532..3038305 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  ABER85_RS14605 (ABER85_14605) mazG 3038417..3039223 (+) 807 WP_346534829.1 nucleoside triphosphate pyrophosphohydrolase -
  ABER85_RS14610 (ABER85_14610) comEA 3039192..3039602 (+) 411 WP_038347430.1 ComEA family DNA-binding protein Machinery gene
  ABER85_RS14615 (ABER85_14615) pcnB 3039727..3041190 (+) 1464 WP_065708526.1 polynucleotide adenylyltransferase PcnB -
  ABER85_RS14620 (ABER85_14620) folK 3041187..3041669 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABER85_RS14625 (ABER85_14625) panB 3041715..3042524 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABER85_RS14630 (ABER85_14630) panC 3042528..3043376 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABER85_RS14635 (ABER85_14635) rapZ 3043399..3044250 (+) 852 WP_346534832.1 RNase adapter RapZ -
  ABER85_RS14640 (ABER85_14640) - 3044247..3044516 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15628.85 Da        Isoelectric Point: 10.3828

>NTDB_id=997675 ABER85_RS14610 WP_038347430.1 3039192..3039602(+) (comEA) [Acinetobacter sp. 8_A20231192]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGAAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=997675 ABER85_RS14610 WP_038347430.1 3039192..3039602(+) (comEA) [Acinetobacter sp. 8_A20231192]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGAGCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment