Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABER85_RS09865 Genome accession   NZ_CP155547
Coordinates   2024506..2025033 (-) Length   175 a.a.
NCBI ID   WP_000695067.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2019506..2030033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS09845 (ABER85_09845) - 2019695..2020570 (-) 876 WP_000218807.1 hypothetical protein -
  ABER85_RS09850 (ABER85_09850) aroB 2020586..2021668 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABER85_RS09855 (ABER85_09855) aroK 2021697..2022266 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABER85_RS09860 (ABER85_09860) pilQ 2022278..2024443 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABER85_RS09865 (ABER85_09865) pilP 2024506..2025033 (-) 528 WP_000695067.1 pilus assembly protein PilP Machinery gene
  ABER85_RS09870 (ABER85_09870) pilO 2025044..2025784 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABER85_RS09875 (ABER85_09875) pilN 2025781..2026422 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  ABER85_RS09880 (ABER85_09880) pilM 2026422..2027480 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19409.60 Da        Isoelectric Point: 8.9898

>NTDB_id=997653 ABER85_RS09865 WP_000695067.1 2024506..2025033(-) (pilP) [Acinetobacter sp. 8_A20231192]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIESAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=997653 ABER85_RS09865 WP_000695067.1 2024506..2025033(-) (pilP) [Acinetobacter sp. 8_A20231192]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTTGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAATCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709

Multiple sequence alignment