Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABER85_RS09375 Genome accession   NZ_CP155547
Coordinates   1921769..1922404 (+) Length   211 a.a.
NCBI ID   WP_049580985.1    Uniprot ID   A0A7X5LTL1
Organism   Acinetobacter sp. 8_A20231192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1916769..1927404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS09360 (ABER85_09360) adeT2 1917829..1918815 (-) 987 WP_017815936.1 putative multidrug efflux protein AdeT2 -
  ABER85_RS09365 (ABER85_09365) - 1918895..1919710 (-) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  ABER85_RS09370 (ABER85_09370) recG 1919731..1921776 (+) 2046 WP_000204961.1 ATP-dependent DNA helicase RecG -
  ABER85_RS09375 (ABER85_09375) comF 1921769..1922404 (+) 636 WP_049580985.1 phosphoribosyltransferase family protein Machinery gene
  ABER85_RS09380 (ABER85_09380) - 1922407..1922808 (-) 402 WP_004839704.1 NUDIX domain-containing protein -
  ABER85_RS09385 (ABER85_09385) - 1922823..1923404 (-) 582 WP_002133678.1 TIGR00730 family Rossman fold protein -
  ABER85_RS09390 (ABER85_09390) - 1923562..1924575 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ABER85_RS09395 (ABER85_09395) - 1924644..1924931 (-) 288 WP_000250997.1 STAS domain-containing protein -
  ABER85_RS09400 (ABER85_09400) - 1924943..1925584 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  ABER85_RS09405 (ABER85_09405) - 1925611..1926291 (-) 681 WP_272324555.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABER85_RS09410 (ABER85_09410) mlaE 1926291..1927067 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24572.69 Da        Isoelectric Point: 9.5704

>NTDB_id=997643 ABER85_RS09375 WP_049580985.1 1921769..1922404(+) (comF) [Acinetobacter sp. 8_A20231192]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQIL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=997643 ABER85_RS09375 WP_049580985.1 1921769..1922404(+) (comF) [Acinetobacter sp. 8_A20231192]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAATCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X5LTL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986

Multiple sequence alignment