Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABER85_RS01280 | Genome accession | NZ_CP155547 |
| Coordinates | 264347..264727 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836915.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. 8_A20231192 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 259347..269727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABER85_RS01250 (ABER85_01250) | kdsB | 260250..261011 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABER85_RS01255 (ABER85_01255) | - | 261023..262003 (+) | 981 | WP_001075412.1 | DNA polymerase III subunit delta' | - |
| ABER85_RS01260 (ABER85_01260) | - | 262015..262356 (+) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| ABER85_RS01265 (ABER85_01265) | - | 262374..263147 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABER85_RS01270 (ABER85_01270) | - | 263185..263793 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABER85_RS01275 (ABER85_01275) | - | 263803..264357 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABER85_RS01280 (ABER85_01280) | xcpV | 264347..264727 (+) | 381 | WP_000836915.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABER85_RS01285 (ABER85_01285) | xcpW | 264727..265428 (+) | 702 | WP_000594584.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABER85_RS01290 (ABER85_01290) | gspK | 265428..266387 (+) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| ABER85_RS01295 (ABER85_01295) | - | 266617..267213 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABER85_RS01300 (ABER85_01300) | ung | 267264..267977 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABER85_RS01305 (ABER85_01305) | - | 267974..269098 (+) | 1125 | WP_000982062.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABER85_RS01310 (ABER85_01310) | tadA | 269105..269608 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=997634 ABER85_RS01280 WP_000836915.1 264347..264727(+) (xcpV) [Acinetobacter sp. 8_A20231192]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=997634 ABER85_RS01280 WP_000836915.1 264347..264727(+) (xcpV) [Acinetobacter sp. 8_A20231192]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
98.413 |
100 |
0.984 |